Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0376 ATGCATTTTACACACGCGCTCCTTCTAACGCGTGTGATTCTCCACCATTTTTTGATACTGAAAAATAACGTGAACTACTCGTACAAGTTTCTCTCTCTCTCTCTTTCTCTTTCTCTATCGAACGAAACAAAACGAACCAATAACAACGATGAACAAGATGAAGTTGTTTCTCTGAGAGTAGCTTTGGATTCATTCATTCATTCATTCAAAACTCACTCATTCATCATTCATTCCTCATTTTCTCAATTCTCAAGTCAAGGGCTATTCCCCTACGGGTTTTATCAGTTAGAAATGGATTTTGAAGAGAAGTTTCTTGCTAAAGTTTCTGGTGTTCGAAGCCTTTCTTCCAGTGTGCATAGTACTCCTGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACACTTTCAGGAGTTCATGAAATATGGTCCAAAGAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACATGTCTTCAAAAAACAGGATGACTGAAGCCAAGTCATGTGGTAAGATAATTAAGAAACAAGACACAAAAAAGGTTTCTAGTCTTAATCGTCAGCCCTCAAAAAAGCAAAATCGGAAGAGTGAAAACCCCATCCGACTTGTACCTCCTCCTAACCAGGCTTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTATCAGTGGATGACACATTTTGTAGACGGTGTTCTTGCTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGAGTTGTCTTGCCACATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTGGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAACTGAATATTGCAAAAGATGCCCGGCGTGTAGATGTACTCTGTTATAGAATATATTTGAGCTACAGGCTCCTGAATGGAACTTCAAAATTTAAAGACCTGCATCAAATTGTACAGGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGATGGAGTTTCTGCCAAAATGGCCCGGGGCATTGTCAGCAGACTCTCTATTGCCAGCGATGTGCAGAGATTCTGCACTCTTGCTATTGAGAAAGCTGACAGCTGGCTGGCCATTGTTCCAAATTTAAATTCAGAGGGTTCACTTCCTGCTGCTTGCAAATTTGTTTTTGAAGAGGTAACAGATTCTTCTGTCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGACATCAAGGGGTACAAGCTTTGGTATTACAAGAGTTGGGATGAACCACCCACAAAGGATCCTGTTTCTGTATTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGCCATGGGTGACCTGGGTCATTCTGAGGCTAAGTGTTTCACTGAGAGCATCGAGATAATTCAAAACAATCCCTCTAAGTCAGTTGCTTCAAATCATAAAAAACAGAACCCTCAAACCGGTGGCAATTCTTCTGGCTCCAAGATGGAGCTCAATCCCACAATGGCAGGTCCCAGATTTAAGGTTCGAGACCTTGGGAAAGTTTTGCGCGTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTTGTGCTGTGCTGATATGAAAAATTGCTGTGGACAAGGCAAAATGAACAAGCCCAAAATTCCAGAAAGGCTGTTGCCTTCAGATTCACGAGGCCTTGATTTAAATGTTGTTTCAGTCCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGGTAATGGTTGCACTTTACTGCAGGCTGTTGAGGCAGATGATGATGCTGTTTCTCATGATCTACAGGAAAACGATAAAGCAAGGTCACATAGGAGTGGCGACTCACAAACCTGGGCTCATGGGCCAAGAGAAGTCTCAGCTGTTGACTCTCGTGTAAATGCAGGCAGGAAAAGGGTTGCGAGCACAAATGAAGAGGCACATGAGTGTGATAGTACTTTGATAAATGGTTCTCCTTTACGTATATCTGGTGGTTCCCATTTCTTGGATGAAAACTTCGAGTATTGTGTGAAGGTTATCCGTTGGCTAGAGTGTGAGGGCCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACGGAGCAGGAACGCAGGGTTGTAAATACCTTCATTCAAACTCTTATGGATGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTGTATCCAGCAAGAAGAGGCCAAGAAATGGACTCAATAGTAAAGCTGGAGCATCAAAATAA 2445 0.4184 MHFTHALLLTRVILHHFLILKNNVNYSYKFLSLSLSLSLSNETKRTNNNDEQDEVVSLRVALDSFIHSFKTHSFIIHSSFSQFSSQGLFPYGFYQLEMDFEEKFLAKVSGVRSLSSSVHSTPEKNGHSDDASRSSEHFQEFMKYGPKKELLQTCFDKDKKNMSSKNRMTEAKSCGKIIKKQDTKKVSSLNRQPSKKQNRKSENPIRLVPPPNQASDFGHPSTWICKNAACRAVLSVDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCELSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTSKFKDLHQIVQEAKAKLETEVGPLDGVSAKMARGIVSRLSIASDVQRFCTLAIEKADSWLAIVPNLNSEGSLPAACKFVFEEVTDSSVKIILIEMSNICSEDIKGYKLWYYKSWDEPPTKDPVSVFPKSQRRILISDLQPCTEYTFRIISYTAMGDLGHSEAKCFTESIEIIQNNPSKSVASNHKKQNPQTGGNSSGSKMELNPTMAGPRFKVRDLGKVLRVAWAQERGYFEELCCADMKNCCGQGKMNKPKIPERLLPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGNGCTLLQAVEADDDAVSHDLQENDKARSHRSGDSQTWAHGPREVSAVDSRVNAGRKRVASTNEEAHECDSTLINGSPLRISGGSHFLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIVSSKKRPRNGLNSKAGASK* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0376 814 Pfam Fibronectin type III domain 427 507 IPR003961 GO:0005515
Tpr3g0376 814 Pfam PHD - plant homeodomain finger protein 225 343 IPR032881 -
Tpr3g0376 814 ProSiteProfiles Fibronectin type-III domain profile. 421 520 IPR003961 GO:0005515
Tpr3g0376 814 SUPERFAMILY Fibronectin type III 427 505 IPR036116 GO:0005515
Tpr3g0376 814 MobiDBLite consensus disorder prediction 657 689 - -
Tpr3g0376 814 MobiDBLite consensus disorder prediction 116 137 - -
Tpr3g0376 814 CDD FN3 426 505 IPR003961 GO:0005515
Tpr3g0376 814 MobiDBLite consensus disorder prediction 182 213 - -
Tpr3g0376 814 MobiDBLite consensus disorder prediction 657 671 - -
Tpr3g0376 814 PANTHER VIN3-LIKE PROTEIN 2-RELATED 152 809 IPR044514 GO:0010048|GO:0040029
Tpr3g0376 814 MobiDBLite consensus disorder prediction 525 551 - -
Tpr3g0376 814 MobiDBLite consensus disorder prediction 123 137 - -
Tpr3g0376 814 Gene3D Immunoglobulins 410 511 IPR013783 -
Tpr3g0376 814 PANTHER VIN3-LIKE PROTEIN 1 152 809 - -
Tpr3g0376 814 CDD PHD_VIN3_plant 245 309 - -
Tpr3g0376 814 MobiDBLite consensus disorder prediction 525 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0376 Tpr-Chr3 4040367 4048756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0376 183 806 PHD Gene Family AT3G24440 47.559 1.75e-180 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0376 - - gmx:100816128 1179.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0376 3 4040367 4048756 Tpr5g0016 5 187799 196521 PCT