Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0345 ATGGCTGCAAAACGTTTTTTGGATGATTCTAATCAAGACAAAGACAAACCAAATGACAAACGGATTAGAACTACACCAACACCTTCTTTTGCTTCGGTAATAGGAGAAGTGGTTAAGGTGAAAAACATGCAAAACCTATTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTTAACGAAGAGGTGGAACGAGCGATGAGACAATGTTATCCACCGCGATCGATAACAAAGTCACCTTCATTGAGACTCAAAGCAGTGGAAGAACCATTAAGTTTTGAATTCATGTTCAAAAAGAAACTTTCACTTCCAATATTCACAGGTAGTAAAATACTAGACATGGATGGAAACTCAATCAATGTGATTCTTGTTGACAAAAGCAATGGCCAAATTGTCCCTACAAGTTTACCTCATCCAATCAAGATTGAAATTGTAGTTCTTGATGGAGATTTTCCTTCTAGTGAAAAAGAATCATCATGGACTAGTGAAGAATTCAATAGTAATATCGTGAAAGAGAGAACTGGGAAGAGGCCATTGCTTACCGGAGAATCAAATCTTACTATGAGAGATGGAATTGCACCAGTTGGAGATATTGAGTTCACCGATAATTCTAGCTGGATTCGTAGCCGAAAGTTTAGAGTTGCTGTTAGAATTGCTCCTGGGACTAATCAAAGTGTCAGAATTCGTGAAGGCATGACCGAACCTTTTGTTGTTAAGGATCATCGTGGTGAATTGTACAAGAAACATCACCCACCAAATCTAAATGACGAAGTGTGGCGGCTAGAGAAGATTGGGAAAGATGGAGCTTTCCACAAAAAATTGACCAAAGAAGGAATTACTACTGTACAAGAGTTTCTCAAGTTATCAGTTGTTGATCCTCAAAGACTCAGAAAGATTTTAGGCATGGGGATGTCAGAGAAAATGTGGGATGTGACAATTAGGCATGCTAAAACTTGTGTAATGGGAAACAAACTATATGTCTACCGTGGGCCTCAAGTTACCATATATCTCAATGCCATATGCCAAATGGTTAAAGCTGCTTATATCAATGGTCAAACCATTCCCAACAACAACATGAATAGGCAGGGCTACATAGAAAAATTGGTGAGAGAAGCATATGCTAGATGGAATGATTTGGAGGAAATTGATGAAGTTTTGAATGACAATGTTGCTTTGTTAACTCAAGGTGGAACAGTGGAACAATTTCAAAATAATAATAATCATCAAGCACCGGGTATAGCATATGATCAAAATGACTTTTTTGGTGATAAATCTATGGAGGGTGGCAATTATGTATCAAGTCATAATAATAATGCACAAATAGGTAGCATCCAGTGGTCACCACCATTTCCCACTTCACCATTCATGAATGCCATATCTTATAGCTTCACAGATTCACAATCAGATGATGGTGATATAACGCCATCAACTTCAGGACCAGTTGTTGATGGAGTGTCAAGGTGGCTTTAA 1467 0.3831 MAAKRFLDDSNQDKDKPNDKRIRTTPTPSFASVIGEVVKVKNMQNLFSGLEPLLRRVVNEEVERAMRQCYPPRSITKSPSLRLKAVEEPLSFEFMFKKKLSLPIFTGSKILDMDGNSINVILVDKSNGQIVPTSLPHPIKIEIVVLDGDFPSSEKESSWTSEEFNSNIVKERTGKRPLLTGESNLTMRDGIAPVGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRIREGMTEPFVVKDHRGELYKKHHPPNLNDEVWRLEKIGKDGAFHKKLTKEGITTVQEFLKLSVVDPQRLRKILGMGMSEKMWDVTIRHAKTCVMGNKLYVYRGPQVTIYLNAICQMVKAAYINGQTIPNNNMNRQGYIEKLVREAYARWNDLEEIDEVLNDNVALLTQGGTVEQFQNNNNHQAPGIAYDQNDFFGDKSMEGGNYVSSHNNNAQIGSIQWSPPFPTSPFMNAISYSFTDSQSDDGDITPSTSGPVVDGVSRWL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0345 488 Pfam Calmodulin binding protein-like N-terminal domain 93 240 IPR046831 -
Tpr3g0345 488 Pfam Calmodulin binding protein C-terminal domain 323 381 IPR046829 -
Tpr3g0345 488 MobiDBLite consensus disorder prediction 1 26 - -
Tpr3g0345 488 MobiDBLite consensus disorder prediction 1 22 - -
Tpr3g0345 488 PANTHER PROTEIN, PUTATIVE-RELATED 1 479 - -
Tpr3g0345 488 PANTHER OS02G0177800 PROTEIN 1 479 IPR012416 GO:0005516
Tpr3g0345 488 Pfam Calmodulin binding protein central domain 253 318 IPR046830 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0345 Tpr-Chr3 3736324 3739364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0345 3 382 Calmodulin-binding Proteins AT5G57580 50.258 2.81e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0345 - - gmx:100802257 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0345 3 3736324 3739364 Tpr3g0345 3 3736324 3739364 ECH
Tpr3g0345 3 3736324 3739364 Tpr5g0263 5 3804696 3810082 PCT