Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0325 ATGGCAGACGTTGAAGTCGATACAGCAGCAGCAGCCGCCGCCGGAGTCCCAAAGAAGAGAACGTTTAAGAAGTTCAGTTTCAGAGGAGTTGATTTGGATGCTCTTCTTGACATGTCCACTGATGAGCTCGTTAAGCTCTTCAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGGAAGCCTATGGCTCTCATCAAAAAGCTTCGCAAAGCGAAAAGGGAGGCACCAGCAGGTGAAAAGCCAGAACCTGTTAGGACTCATCTTCGTAACATGATTATTGTTCCTGAGATGATTGGGAGCATTATTGGAGTGTACAATGGAAAGACATTTAACCAGGTTGAAATCAAGCCTGAGATGATTGGACATTACCTTGCTGAGTTCTCAATTTCATACAAGCCAGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA 468 0.4658 MADVEVDTAAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0325 155 Pfam Ribosomal protein S19 53 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 ProSitePatterns Ribosomal protein S19 signature. 108 132 IPR020934 GO:0003723
Tpr3g0325 155 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 7 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 12 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 Gene3D 30s Ribosomal Protein S19; Chain A 12 155 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 PANTHER BNAA03G55820D PROTEIN 7 155 - -
Tpr3g0325 155 TIGRFAM uS19_arch: ribosomal protein uS19 22 155 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tpr3g0325 155 SUPERFAMILY Ribosomal protein S19 58 139 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 Hamap 30S ribosomal protein S19 [rpsS]. 51 144 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 PRINTS Ribosomal protein S19 family signature 88 107 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 PRINTS Ribosomal protein S19 family signature 108 120 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0325 155 PRINTS Ribosomal protein S19 family signature 120 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0325 Tpr-Chr3 3528140 3529633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0325 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.742 2.56e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0325 K02958 - gmx:100801408 285.804