Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0324 ATGGGAAATGCGCTTTTGACCATGTTTAAATCGGCAGACGTTGAGGTTGATGCAGCAGCAGCCGCCGCCGGAGTCCCGAAGAAGAGAACGTTTAAGAAGTTCAGTTTCAGAGGAGTTGATTTGGATGCTCTTCTTGACATGCCCACTGATGAGCTCGTTAAGCTCTTTAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGAAAGCCTATGGCTCTCATCAAAAAGCTTCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCGGAACCTGTTAGGACTCATCTTCGTAACATGATTATTGTACCTGAGATGATTGGGAGCATTATTGGTGTGTACAATGGAAAGACATTTAACCAGGTTGAAATCAAACCTGAGATGATTGGGCATTACCTTGCCGAGTTCTCAATTTCATACAAGCCAGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCTTCCAGGTTCATTCCTCTCAAGTGA 495 0.4626 MGNALLTMFKSADVEVDAAAAAAGVPKKRTFKKFSFRGVDLDALLDMPTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKMEAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0324 164 Gene3D 30s Ribosomal Protein S19; Chain A 21 164 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 ProSitePatterns Ribosomal protein S19 signature. 117 141 IPR020934 GO:0003723
Tpr3g0324 164 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 16 164 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 PRINTS Ribosomal protein S19 family signature 97 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 PRINTS Ribosomal protein S19 family signature 117 129 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 PRINTS Ribosomal protein S19 family signature 129 144 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 TIGRFAM uS19_arch: ribosomal protein uS19 31 164 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tpr3g0324 164 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 21 164 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 Pfam Ribosomal protein S19 62 147 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 Hamap 30S ribosomal protein S19 [rpsS]. 60 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr3g0324 164 PANTHER BNAA03G55820D PROTEIN 16 164 - -
Tpr3g0324 164 SUPERFAMILY Ribosomal protein S19 67 148 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0324 Tpr-Chr3 3516738 3519625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0324 17 164 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.514 1.19e-94 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0324 K02958 - gmx:100801408 281.567