Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0310 ATGGCTGAACGTGGTGGCGGAGATCGTGGCGGTTTCGGTAGCGGTTTCGGTGGTCGTGGTGATAGAGGTGGTCGCGGTGGTCGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCAGGTGGAAGACGCGATGAAGAAGAGAAATGGGTTCCAGTTACCAAACTCGGTCGTCTCGTGAAAGAAGGAAAGATCCGTAGCCTTGAACAGATCTACCTTCATTCACTCCCAATCAAGGAGCATCAAATCATCGATACTCTCGTTGGTCCAACTCTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACCAGAGCCGGTCAAAGAACCCGGTTCAAAGCTTTCGTTGTTGTTGGTGATAGCAACGGTCACGTTGGTCTCGGTGTTAAGTGTAGCAAAGAAGTAGCTACTGCTATTCGTGGTGCTATTATTTTGGCTAAGCTTTCTGTTATTCCTGTTAGGAGAGGCTATTGGGGTAATAAGATTGGAAAACCTCACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAATTTGCTGGTATTGATGATGTTTTTACTTCCTCTAGGGGTTCCACCAAAACCCTTGGAAACTTCGTCAAGGCTACATTTGACTGTTTGATGAAAACCTACGGGTTTTTGACACCTGAATTCTGGAAGGAGACTACTTTCTCCAAATCTCCATTCCAAGAGTACACTGATTTGTTAACAGCTAAGCCAATTGGAAAGGTTGTGATCACTGATGAAGAAAGGGGGGTGGAGGCTTGA 846 0.4645 MAERGGGDRGGFGSGFGGRGDRGGRGGRGDRGRGGRRRAGGRRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETTFSKSPFQEYTDLLTAKPIGKVVITDEERGVEA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0310 281 MobiDBLite consensus disorder prediction 23 46 - -
Tpr3g0310 281 Gene3D - 154 247 IPR014721 -
Tpr3g0310 281 ProSitePatterns Ribosomal protein S5 signature. 108 140 IPR018192 -
Tpr3g0310 281 PANTHER RIBOSOMAL S SUBUNIT 2 275 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g0310 281 Pfam Ribosomal protein S5, C-terminal domain 175 247 IPR005324 GO:0003735|GO:0005840|GO:0006412
Tpr3g0310 281 ProSiteProfiles S5 double stranded RNA-binding domain profile. 91 154 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g0310 281 SUPERFAMILY Ribosomal protein S5 domain 2-like 167 247 IPR020568 -
Tpr3g0310 281 MobiDBLite consensus disorder prediction 1 46 - -
Tpr3g0310 281 Pfam Ribosomal protein S5, N-terminal domain 91 155 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr3g0310 281 TIGRFAM uS5_euk_arch: ribosomal protein uS5 44 251 IPR005711 GO:0003735|GO:0006412|GO:0015935
Tpr3g0310 281 Gene3D - 48 153 - -
Tpr3g0310 281 PANTHER BNAC04G47870D PROTEIN 2 275 - -
Tpr3g0310 281 SUPERFAMILY dsRNA-binding domain-like 87 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0310 Tpr-Chr3 3378256 3379957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0310 45 272 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 89.610 1.64e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0310 K02981 - gmx:100797105 464.151