Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0271 ATGCTAGGTTCATTACCTATACTTCCTCTACCTGCTCCTCCCGTTGATGGAAATCTCGGTCCTCTCCCCGAGGCTCAACTCACTCAGGAGGAGGTGAACGAGAGGAATGAGAATGAGAAATCCTCGATCGAGGAAGCAACACCGACAACTGTTGCTACACACACTAGAACTATTGGAATAATTCATCCCCCTCCAGATATTAGAACCATTGTTGATAAAACCTCTGTGTTCGTTGCTAAAAATGGTCTTGAATTTGAAAAGAGGATTATTGCTAGTAATGCAGGCAATGCTAAGTTTAATTTCCTCAATTCATCGGATCCTTATCATGCGTATTATCAGCACAGGTTGGCTGAGTTTCGTGCTCAGAATCAGTCTTCTACTCAACAACCTGGGGATTCTGCTCTACTGGAATCAGCTCCGCCTGCGCCATCTGCTACTGATAGTACTGATGTAGCAACTACTGAGAAGCCTGATGTTTCTGCCCAGTTTAGACCAGTAAGGAAAGTGCTTGATCCTCCTGAGGCTGAGCAGTATACAGTTAGGCTGCCTGAAGGAATTACGGGGGAAGAGCTCGATATAATAAAGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCCTTTTTGACTGGATTGACGAGTAGGGAAATTAATAATCCCCAGTTTCATTTCTTGAAACCAACGCACAGCATGTTTACATTTTTTACTTCCCTTGCGGATGCATATTCAAAGGTTTTGATGCCTCCCAAGGGTTTGACTGAGAAGTTGAAGAAGAGTGTCCCTGACATGACTACCGTGCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAGCGTTCTCAAGAGCAAGCTAGGCAAAAAGCTGAAGATGAGATAGAGCAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAATCAATAGATTTTGCTGATGATGAGGATGAAGAATTGCCTCCTCCAATGACGCTTGAAGAGGTCATAAGGAGAAGCAAGATGACACCCATGGAAGAAGATATCGTTGAGCCAGGAAAGGAAGTAGAAATGGAAATGGACGAGGAAGAGGCCCAGCTTGTTGAAGAGGGAATGAGAGCTGCTAGTTTGGAAGACAACGATGAAGGGAAGAAGAATGAAGTCAGGGTTACTGAAGACCCCGAACCACCGATGAGGATTGTGAAGAACTGGAAAAGACCAGAGGAGAGGCTTCCTTCTGATAAAGATTCAACTAAGTTTGTTGTTTCTCCTATCACTGGTGAACTGATTCCTATTAGTGAAATGTCAGAACACATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACCACGCTGGCACAAGATGATGAAATCTCAAAAAATATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTTGGTACTACAGAGGAAGAGGTTTCCAATGCTGTGAAGGCTGAAATTGAGAAAAATGATGAACAACCTAAGCAGGTTATATGGGATGGTCACAGTGGTAGTATTGGCCGTACTGCAAACCAAGCAATGTCACAGAATATTGGGAGTGAGGATCAAAATGATGCTTTTAATAATGAATCTAGAAACCTCCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGCATGCCTTCAGTTCGTCCTCTTCCGCCACCACCTGGACTAGCTTTGAATCTACCTCGTGGTCCTATGCATACCATGCAGTATTCTAATCCTAATAGCGGTGGCCTTCCAATGCCTCCACCAAGACCGCCAGGCATGCACATGATGCAATCTCTCAGGCCAGTGCCCCCTCAAATGCAAATGTCTGCTGGACAGCATTCCATGATGGGCGGTCAACCACCCCAAATGCATCCTTCAATTCCTATGAATAATCAAGGAATTCCCATACCTCCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCCTTATGTTCCTCTCTCTCATCCACCATCAGGGATGCCTATGATGCATCCACCACCGCCGCCTCAAGGACTACCACCGCCGCCGCCACCTGAGGAAGCTCTTCCCCCGCTCCCAGAGGAACCAGAACCAAAGAGGCAGAAGCATGATGATTCTGTTCTGATCCCTGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGCATCAGTGTTTCTGTTCCTAATGTTGATGAAGGAAATCTCAAGGGACAAGTTCTCGAAATAACTGTTCAATCTCTATCTGAAACTGTTGGAAGCCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGACAATATGTCACTTGCACATTACAATATTAGTGGAGGAGAAACACTCTCCCTAACCTTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2424 0.4538 MLGSLPILPLPAPPVDGNLGPLPEAQLTQEEVNERNENEKSSIEEATPTTVATHTRTIGIIHPPPDIRTIVDKTSVFVAKNGLEFEKRIIASNAGNAKFNFLNSSDPYHAYYQHRLAEFRAQNQSSTQQPGDSALLESAPPAPSATDSTDVATTEKPDVSAQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDEGKKNEVRVTEDPEPPMRIVKNWKRPEERLPSDKDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEEEVSNAVKAEIEKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGSEDQNDAFNNESRNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRGPMHTMQYSNPNSGGLPMPPPRPPGMHMMQSLRPVPPQMQMSAGQHSMMGGQPPQMHPSIPMNNQGIPIPPPPGSQFTPVPRPYVPLSHPPSGMPMMHPPPPPQGLPPPPPPEEALPPLPEEPEPKRQKHDDSVLIPEDKFLAQHPGPARISVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNISGGETLSLTLRERGGRKR* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0271 807 MobiDBLite consensus disorder prediction 534 599 - -
Tpr3g0271 807 SUPERFAMILY Surp module (SWAP domain) 170 243 IPR035967 GO:0003723|GO:0006396
Tpr3g0271 807 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 160 807 IPR045146 GO:0003723|GO:0045292
Tpr3g0271 807 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 116 IPR045146 GO:0003723|GO:0045292
Tpr3g0271 807 Pfam Surp module 191 242 IPR000061 GO:0003723|GO:0006396
Tpr3g0271 807 Pfam Surp module 68 119 IPR000061 GO:0003723|GO:0006396
Tpr3g0271 807 PANTHER SPLICING FACTOR 3A, PROTEIN 7 116 - -
Tpr3g0271 807 PANTHER SPLICING FACTOR 3A, PROTEIN 160 807 - -
Tpr3g0271 807 MobiDBLite consensus disorder prediction 373 411 - -
Tpr3g0271 807 CDD Ubl_SF3a120 720 800 IPR035563 -
Tpr3g0271 807 ProSiteProfiles Ubiquitin domain profile. 748 804 IPR000626 GO:0005515
Tpr3g0271 807 MobiDBLite consensus disorder prediction 373 412 - -
Tpr3g0271 807 MobiDBLite consensus disorder prediction 29 52 - -
Tpr3g0271 807 Gene3D Surp module 54 127 IPR035967 GO:0003723|GO:0006396
Tpr3g0271 807 SMART surpneu2 191 244 IPR000061 GO:0003723|GO:0006396
Tpr3g0271 807 SMART surpneu2 68 121 IPR000061 GO:0003723|GO:0006396
Tpr3g0271 807 ProSiteProfiles SURP motif repeat profile. 193 235 IPR000061 GO:0003723|GO:0006396
Tpr3g0271 807 MobiDBLite consensus disorder prediction 691 710 - -
Tpr3g0271 807 ProSiteProfiles SURP motif repeat profile. 70 112 IPR000061 GO:0003723|GO:0006396
Tpr3g0271 807 MobiDBLite consensus disorder prediction 543 569 - -
Tpr3g0271 807 Pfam Ubiquitin family 735 802 IPR000626 GO:0005515
Tpr3g0271 807 MobiDBLite consensus disorder prediction 661 720 - -
Tpr3g0271 807 Pfam Pre-mRNA splicing factor PRP21 like protein 262 474 IPR022030 -
Tpr3g0271 807 SUPERFAMILY Surp module (SWAP domain) 45 120 IPR035967 GO:0003723|GO:0006396
Tpr3g0271 807 Coils Coil 355 375 - -
Tpr3g0271 807 SMART ubq_7 728 800 IPR000626 GO:0005515
Tpr3g0271 807 MobiDBLite consensus disorder prediction 661 690 - -
Tpr3g0271 807 Gene3D - 696 806 - -
Tpr3g0271 807 Gene3D Surp module 186 244 IPR035967 GO:0003723|GO:0006396
Tpr3g0271 807 SUPERFAMILY Ubiquitin-like 702 805 IPR029071 -
Tpr3g0271 807 Coils Coil 277 297 - -
Tpr3g0271 807 MobiDBLite consensus disorder prediction 122 158 - -
Tpr3g0271 807 MobiDBLite consensus disorder prediction 142 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0271 735 804 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 2.01e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0271 K12825 - gmx:100797261 1193.72