Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0268 ATGCCTTTTGTGACACAAGAGACAACAACAACAACAACAAAAACAGAACAATGGAGAAAACAACACAGAAACCAAATCGGTTACAAAACCATTTTAGAAACAGATCCTAACACAAAACAAATCCGACCCATTATCCAATCCACACGTTGCAAGTCCACAATTTCATCTCTTCTTCTATCCACATTCACCAATGAAACAACAACCTCACAACAACCCAACAACAAAAAGATCAACTTTTCATCTGCTGCAGCTACCATCAGAGGTTTAGGATGCACTGCCGGTGCTTCTCAGCAGGTGTCGGTGCCGGAGGTGATTCGTGCCTCTGCAGATTGGCCTCATCAAGTGAACAAAACCAGAAAAAAGAAGAAGAACAAGAGAAACAACAAGAATAGTAGTAGTAATGATGGTTCTTCTTCTGCTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGACCTGGAATGGGATTCTCAACAGATGCTGCTGCATCTGTTGATTGTGTTGTGTCTAAGAAGAATGCTTCTTCAACTTCAAGGGCTAAAATTGATGTGGACAAGATTACTCATAGAGGGTCTTCATCTTCATTCCGAAGGCGCACTACTGTCCACCCAGAAGCCTTCTCTTTTCCGGATACCGATCCTGACATTTTCACAGCATGCTCTTTTGGAACTGCCGCATACCCTCGCCATATCAGAGATATTTCTTCTGATGATTTTTCTGAGATAATGGCACTTCAAGGAAGAATGCGAATGGGAAGACGATTCAATTCACACGACCTTTACAGAGAGTGGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTTATGTCAATACCGGACTTGAAGAAGATGAGATCGAACCTTACATAATGAAGACTAAGCTTCAGCAGCTTTGTGAAGATGCTTCAAAGCATCAAGTAGACAAAAAATGCAGCATCTTCCAGGAGGAGTATGAAGCAGATGATGAGGTTGGGAGGCTTAACTGTGATCACTTATATCACTTTCAATGCATACAACAATGGGTTGGACACAAAAATTTCTGTCCAGTGTGTAAGCAGCAAGTTGCAGCTAGACACTGA 1104 0.4158 MPFVTQETTTTTTKTEQWRKQHRNQIGYKTILETDPNTKQIRPIIQSTRCKSTISSLLLSTFTNETTTSQQPNNKKINFSSAAATIRGLGCTAGASQQVSVPEVIRASADWPHQVNKTRKKKKNKRNNKNSSSNDGSSSATCVDFQDVWCGPGMGFSTDAAASVDCVVSKKNASSTSRAKIDVDKITHRGSSSSFRRRTTVHPEAFSFPDTDPDIFTACSFGTAAYPRHIRDISSDDFSEIMALQGRMRMGRRFNSHDLYREWRLDVDNMSYEQLLELGERIGYVNTGLEEDEIEPYIMKTKLQQLCEDASKHQVDKKCSIFQEEYEADDEVGRLNCDHLYHFQCIQQWVGHKNFCPVCKQQVAARH* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0268 367 Pfam Ring finger domain 318 360 IPR001841 -
Tpr3g0268 367 SMART ring_2 319 359 IPR001841 -
Tpr3g0268 367 SUPERFAMILY RING/U-box 310 364 - -
Tpr3g0268 367 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 9 367 - -
Tpr3g0268 367 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Tpr3g0268 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 9 367 IPR045191 GO:0061630
Tpr3g0268 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 365 IPR013083 -
Tpr3g0268 367 MobiDBLite consensus disorder prediction 108 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0268 Tpr-Chr3 3076955 3079969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0268 17 273 C3H Transcription Factor Family AT1G73760 39.350 2.60e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0268 - - cam:101510167 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0268 3 3076955 3079969 Tpr5g0291 5 4350465 4355684 ECH
Tpr3g0268 3 3076955 3079969 Tpr3g0268 3 3076955 3079969 ECH