Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0255 ATGGATCTCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGAAGACATTAATGGGGTGGTAAATCCAGAGGATGAAAAGCCAGATGTTGATAATTTTGATAAGATGGAGGATGAAGGTTTGTTGTCAGGAAATGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGTTGAGGCCGAGCCAAAAGCGAAAGATAAGGAAATTCCTCCCGTTCAAGATGAAGAAGATGAGCACATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGCTGGTACATGGCCTATATTATGGACACAAACGAGGAGGAGAGAGTTAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGACACTACAAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGGTTAGAGCTCTCTCTCTGCCTTTATGAGCTTATCTGGAATTGTAAAGAGATATCTTACTGGTGGTGTTCTATTAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTAAACATAAAAACAAGATTGGATAAAAGTCATTGTTCATGGTGGGATGGACCTTGCTTATTTGAATCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCCAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTAAGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTTGTTGCTATATATATCGATGAAAAGCGGGTTAACATCGCTGGACCTGGTGAAAATTTACGGGTTCGATTATCTGGCATTGAAGAAGAAGACTTATTGTCTGGGTTCGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAGTTGCAGATCCTTGAATTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCATGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGGAACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATATGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGGAAAATCACTGCTATCTAA 1599 0.4028 MDLEEDIRSLQLDSAEDINGVVNPEDEKPDVDNFDKMEDEGLLSGNDPKQEVQAQSVEAEPKAKDKEIPPVQDEEDEHMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERLELSLCLYELIWNCKEISYWWCSIRYDEIESKMVPFLKQSGYNVKKDVSFLPISGLMGLNIKTRLDKSHCSWWDGPCLFESLDSIEVPMGDPQSPFRMPIIDKFKDMGTVVMGKVESGTIKDGDSLLIMPNKDHVKVVAIYIDEKRVNIAGPGENLRVRLSGIEEEDLLSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLEQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKITAI* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0255 532 Gene3D - 62 330 IPR027417 -
Tpr3g0255 532 MobiDBLite consensus disorder prediction 21 45 - -
Tpr3g0255 532 Pfam Elongation factor Tu C-terminal domain 422 532 IPR004160 -
Tpr3g0255 532 Gene3D Translation factors 335 420 - -
Tpr3g0255 532 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Tpr3g0255 532 PRINTS GTP-binding elongation factor signature 164 174 IPR000795 GO:0003924|GO:0005525
Tpr3g0255 532 PRINTS GTP-binding elongation factor signature 180 191 IPR000795 GO:0003924|GO:0005525
Tpr3g0255 532 PRINTS GTP-binding elongation factor signature 224 233 IPR000795 GO:0003924|GO:0005525
Tpr3g0255 532 Gene3D Translation factors 424 532 - -
Tpr3g0255 532 CDD EF1_alpha 85 330 - -
Tpr3g0255 532 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 426 531 IPR009001 -
Tpr3g0255 532 PANTHER BNAA06G12300D PROTEIN 263 526 - -
Tpr3g0255 532 PANTHER BNAA06G12300D PROTEIN 2 242 - -
Tpr3g0255 532 Pfam Elongation factor Tu domain 2 350 416 IPR004161 GO:0005525
Tpr3g0255 532 MobiDBLite consensus disorder prediction 1 77 - -
Tpr3g0255 532 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 137 152 IPR031157 -
Tpr3g0255 532 CDD eRF3_C_III 424 532 - -
Tpr3g0255 532 SUPERFAMILY Translation proteins 330 422 IPR009000 -
Tpr3g0255 532 PANTHER TRANSLATION FACTOR 263 526 - -
Tpr3g0255 532 PANTHER TRANSLATION FACTOR 2 242 - -
Tpr3g0255 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 341 IPR027417 -
Tpr3g0255 532 Pfam Elongation factor Tu GTP binding domain 81 308 IPR000795 GO:0003924|GO:0005525
Tpr3g0255 532 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 335 IPR000795 GO:0003924|GO:0005525
Tpr3g0255 532 MobiDBLite consensus disorder prediction 58 77 - -
Tpr3g0255 532 CDD eRF3_II 337 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0255 Tpr-Chr3 2991618 2999285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0255 81 532 Eukaryotic Initiation Factors Gene Family AT5G60390 35.824 1.34e-89 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0255 K03267 - gmx:100793653 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0255 3 2991618 2999285 Tpr3g0255 3 2991618 2999285 ECH