Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0243 ATGGATTCCTCTTCAACTTGTTCTTCCTTTGATCTTCTTCCACCAGCGCCTCCTCCTCAATTCACCAGCCTCCTCCAACAACAACAACCACATCATCCTCCTTATGCTGAGATGATATACAAAGCAATAGAAGCACTGAAAGAGAAAGATGGATCAAGCAAAAGAGCAATTGGAAAGTACATAGAACATGTCTACAAACAAGTTCTTCCACCACAACAACAACATGCTACCTTGTTGACACAACACCTCAACCACTTGAAATATGCAGGTCTTCTCATCATGATCAAAAAATCATACAAACTACCTTCCTCACTTCCACCACCTCCAACTCTCATCACCAGATCTACTGCTCAATCACATCTCCCTTTCACTCCCTTAATAACAACCCAACAAAGACCCCGTGGTCGTCCCCCTAAGCCCAAACCCCAACAACAACAACAACAAAATAATGTCCTCTTCGTTTCTCTCGACACTACTACTACTACTACTGCTACTGTACCTCCTCCTACAACAACAACAACTACCGTGGATCCAGTCAGAAGAAGAGGCCGCGGACGTCCTCCTGGGACCTTCAGATCTAAGACGCTCAAGAGTCCCGGTCGTCCTCCTAAGCCTAAATCTGTCTCTAATGCTGGCTTCAAACGACGTCCGGGCCGCCCTCCTAAGATTCAATCTCAACAACCAACTGTCATTCCTTTTGCTGCTTCTATTCTTCCAGACCACCACCAACCCACACTATCATCTGCTAGATCTACCAGGCCCAGAGGCAGGCCCAACAAGTATGCAGATGATGATGCACCGGTTGTTGCCCCTGCGACTAAGGCCGTAGCTAGGCCCAACAATTCCTCCCGAAGGCCCGTTGGACGCCCAAAGGGATCAAAAGCTGCAAAAAAGCTTAATGATGAAGATCTAAGAAAGAAACTTGAACACTTTCAATCGAAGATTAAGGAATCTCTTGATGTGCTTAAGCCATATTTTGATAAAGAAAGTCCAGTCACTGCAGTTGCAGCAATCCAAGAGTTGGAAATGCTGGCAACTTTGGACCTTAAAGCACCATTAAGAGATGAAACACAGCAACAGCAACCACAGCCATTTTCGGAACAGGAACAGCCACAGCCGGAACAGCCACAGCCTGAACAACAGCTACCACCTCAGCAACTGCATCCCCAGCTAGTGACGCAGGCACAGATTTATGAACAGCAATATCTCCAGATGCCATTTCAGCCACAGGTGCAGCAACTTTTTCAGCCACATACTTTAGCACCGAGCTAG 1272 0.4662 MDSSSTCSSFDLLPPAPPPQFTSLLQQQQPHHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPQQQHATLLTQHLNHLKYAGLLIMIKKSYKLPSSLPPPPTLITRSTAQSHLPFTPLITTQQRPRGRPPKPKPQQQQQQNNVLFVSLDTTTTTTATVPPPTTTTTTVDPVRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQQPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYADDDAPVVAPATKAVARPNNSSRRPVGRPKGSKAAKKLNDEDLRKKLEHFQSKIKESLDVLKPYFDKESPVTAVAAIQELEMLATLDLKAPLRDETQQQQPQPFSEQEQPQPEQPQPEQQLPPQQLHPQLVTQAQIYEQQYLQMPFQPQVQQLFQPHTLAPS* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0243 423 MobiDBLite consensus disorder prediction 241 301 - -
Tpr3g0243 423 MobiDBLite consensus disorder prediction 116 228 - -
Tpr3g0243 423 MobiDBLite consensus disorder prediction 141 178 - -
Tpr3g0243 423 MobiDBLite consensus disorder prediction 349 393 - -
Tpr3g0243 423 Gene3D - 26 111 IPR036388 -
Tpr3g0243 423 PANTHER HISTONE H1 15 362 - -
Tpr3g0243 423 MobiDBLite consensus disorder prediction 353 375 - -
Tpr3g0243 423 MobiDBLite consensus disorder prediction 116 131 - -
Tpr3g0243 423 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Tpr3g0243 423 PRINTS AT-hook-like domain signature 179 190 IPR017956 GO:0003677
Tpr3g0243 423 PRINTS AT-hook-like domain signature 250 260 IPR017956 GO:0003677
Tpr3g0243 423 CDD H15 30 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr3g0243 423 PANTHER HISTONE H1-LIKE 15 362 - -
Tpr3g0243 423 SMART h15plus2 29 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr3g0243 423 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 31 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr3g0243 423 Pfam linker histone H1 and H5 family 32 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr3g0243 423 SUPERFAMILY "Winged helix" DNA-binding domain 28 108 IPR036390 -
Tpr3g0243 423 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Tpr3g0243 423 SMART AT_hook_2 284 296 IPR017956 GO:0003677
Tpr3g0243 423 SMART AT_hook_2 252 264 IPR017956 GO:0003677
Tpr3g0243 423 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Tpr3g0243 423 SMART AT_hook_2 214 226 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0243 Tpr-Chr3 2907386 2910175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0243 38 106 Single Myb Histone (SMH) Gene Family AT1G49950 39.130 3.34e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0243 - - mtr:MTR_8g106980 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0243 3 2907386 2910175 Tpr3g0243 3 2907386 2910175 ECH