Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0206 ATGGTTCTCTCAAAAACATCCTCCGAATCCGATGTTTCTGTTCATTCAACCTTTGCTTCTCGCTATGTTAGAACTTCACTTCCTAGATTCAAGATGCCGGAGGAGTCGATACCGAAGGAAGCGGCATACCAAATAATAAACGATGAATTGATGTTGGATGGAAATCCTAGATTGAATCTAGCATCTTTTGTAACAACTTGGATGGAGCCTGAGTGTGATAAGCTTATTATGGCTTCCATCAACAAGAACTATGTTGACATGGATGAATACCCTGTCACTACTGAACTTCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAAAATGAGGCTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAAGCTATAATGTTAGCTGGATTGGCTTTCAAAAGAAAGTGGCAGAACAAAAGGAAACAAGAGGGAAAGCCTTTTGACAAGCCCAACATTGTCACCGGAGCCAATGTCCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAATTGAAAGAGGTGAAACTAAATGAAGGATACTATGTAATGGACCCTAAAAAGGCTGTAGATTTGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTTAAAACCTTAAATGATCTCCTAGTTGAAAAAAATAAGGAAACCGGATGGGATACTCCTATTCATGTTGATGCAGCTAGTGGCGGCTTCATTGCCCCGTTTATTTATCCGGAGCTTGTGTGGGATTTTCGCTTACCGCTAGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGTCTTGTCTATGCCGGAATCGGTTGGGCTGTTTGGAGAAGCAAGGAAGACTTGCCTGAGGAACTCATCTTTCACATCAACTATCTAGGAGCTGATCAACCTACCTTTACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGGTATAAAAATGTGATGGAAAATTGTAGAGACAACATGATAGTATTGAAAGAGGGGCTCGAGAAAATGGGACGATTCAACATTGTGTCGAAAGACGATGGTGTTCCTCTAGTAGCTTTCACATTGAAGGACCACACAAACTTTGATGAATTCCAAATCTCCGACTTATTGAGGCGCTTCGGATGGATTGTTCCGGCATACAGCATGCCCCCGGATGCACAACACATAACCGTTTTACGTGTTGTCATAAGGGAGGATTTCTCGAGGACTTTAGCAGAGCGCCTTGTGGCTGATGTCGAGAAAGTGTTACACGAGCTTGATACACTAGCGGCGAGGATAAGGTTGATAAGTAGCACTAGTAATGTTACAATTAGTGAAGAAGTTGTGAAAAATAATGGTCAAGTTGTGGCTACTAAAAAGAGTGCTTTGGAGACTCAGAGAGAAATCACTGCTGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTGAATGATAAGATGAATGGTGTTTGCTAG 1530 0.4209 MVLSKTSSESDVSVHSTFASRYVRTSLPRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEENEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKQEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLNEGYYVMDPKKAVDLVDENTICVAAILGSTLNGEFEDVKTLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELVWDFRLPLVKSINVSGHKYGLVYAGIGWAVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMIVLKEGLEKMGRFNIVSKDDGVPLVAFTLKDHTNFDEFQISDLLRRFGWIVPAYSMPPDAQHITVLRVVIREDFSRTLAERLVADVEKVLHELDTLAARIRLISSTSNVTISEEVVKNNGQVVATKKSALETQREITAVWKKFVLERKKLNDKMNGVC* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0206 509 Gene3D - 66 360 IPR015421 GO:0003824
Tpr3g0206 509 Gene3D - 361 447 - -
Tpr3g0206 509 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Tpr3g0206 509 CDD DOPA_deC_like 59 439 - -
Tpr3g0206 509 Gene3D - 1 65 - -
Tpr3g0206 509 PANTHER GLUTAMATE DECARBOXYLASE 1 509 - -
Tpr3g0206 509 PANTHER GLUTAMATE DECARBOXYLASE 1 509 IPR010107 GO:0004351|GO:0006536|GO:0030170
Tpr3g0206 509 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tpr3g0206 509 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0206 Tpr-Chr3 2611913 2618210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0206 1 509 Calmodulin-binding Proteins AT5G17330 83.170 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0206 K01580 - gmx:100796533 936.021