Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0192 ATGGTATTGTCATGGACAAGAAGAAACATGTTCCGTCGTACCCACAAGGCAAAAGAGCAACTTTCCGGCGGCGATTTAACGGTGGAGGAGATAACAATCCCAACCCATTTCCGGTGTCCGGTGAGTCTAGATTTGATGAAAGATCCAGTAACTTTATCAACAGGAATCACCTATGACAGAGTAAGTATCGAAAAATGGATTGAATCTGGAAACAAAACATGCCCAGTTACAAATCAGAAACTTTCATCTTTCGAAATCACACCAAATCATACAATAAGAAAAATGATTCAGAGTTGGTGTGTTGAAAATATTTCTTATGGAATTGAAAGAATTCCAACTCCTCGTATACCTGTTTCTAGCTACGAGGTTTCTGATGTTTGTACTAGGTTGTTGTCGGGTTGTAGAAGTTTGGATGAGAAAAAGTGTGTTGAGTTTGTTGGAAAGATTAAGGTTTGGTGGAGAGAGAGTGAAAGGAATAAAAGGGTTATTGTTGGAAATGGTGTTTGTTCTGTTTTAGCAACGGTTTTTGATTCTTTTTCATGTGTTTCATTTGAGAAACATGTTGTTATTTTGGAGGAGATTTTGGAGATTTTAACATGGATGGTTATGACTCCTTTGGGCGAATCAAAATCAAGATTGTTTTCGTCGTCGAATTCTTTAAGTTGTTTGGTGTGGTTTCTTGATGGTAAAGATTTAGGAGCAAGACAAAATGCTGTTTTGTTACTTAAGGAAGTTACAAATGTTGAGGAATTATCAAAAGTTGAAAGTGTTGTTGAAGGTTTAATCAAGATTATTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTGACAACAATTTTCAAGTTGGTTTCATCAACTAAAAATAGAGTTGAAATTGGTGAAAGATTTGTTGAATTGGGTTTAGTTTCATTTTTACTTGAAACAATTGTTGATGGAGAAAAAGGGATAATTGAGAAAGCACTTGGTGTTTTAGATTGTTTATGTGACTTCAAGAAAGGTATTGAGGTTGTGAAAATTAATGCTTTAACTTTACCTCTTGTGATTAAGAAACTTTTGAGGGTTTCTCCATTAGCTTCTAGTTTTGGTGTTAGTATTGTTAGGAAGATATTATGTGAGAAAAAGGAAGAAAGTGTTTTGATTGAAGCAATTCAACTTGGTGCTTTTCAGAAATTGTTGGTTATGTTGCAAGTTGGGTGTGAGGAGAAAACAAAGGAGAATACTACTGAGTTGTTGAAATTGTTGAATGGTTATAGAAGCAAAGCAGAATGTGTTGATTCTTCATTAGATTTTAAGTATCTTAAGAACTAA 1314 0.3463 MVLSWTRRNMFRRTHKAKEQLSGGDLTVEEITIPTHFRCPVSLDLMKDPVTLSTGITYDRVSIEKWIESGNKTCPVTNQKLSSFEITPNHTIRKMIQSWCVENISYGIERIPTPRIPVSSYEVSDVCTRLLSGCRSLDEKKCVEFVGKIKVWWRESERNKRVIVGNGVCSVLATVFDSFSCVSFEKHVVILEEILEILTWMVMTPLGESKSRLFSSSNSLSCLVWFLDGKDLGARQNAVLLLKEVTNVEELSKVESVVEGLIKIIKEPIGSSATKACLTTIFKLVSSTKNRVEIGERFVELGLVSFLLETIVDGEKGIIEKALGVLDCLCDFKKGIEVVKINALTLPLVIKKLLRVSPLASSFGVSIVRKILCEKKEESVLIEAIQLGAFQKLLVMLQVGCEEKTKENTTELLKLLNGYRSKAECVDSSLDFKYLKN* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0192 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Tpr3g0192 437 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 13 437 - -
Tpr3g0192 437 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Tpr3g0192 437 SUPERFAMILY RING/U-box 24 103 - -
Tpr3g0192 437 CDD RING-Ubox_PUB 37 79 IPR045210 -
Tpr3g0192 437 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Tpr3g0192 437 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Tpr3g0192 437 PANTHER WDSAM1 PROTEIN 13 437 IPR045185 GO:0061630
Tpr3g0192 437 Gene3D - 122 421 IPR011989 -
Tpr3g0192 437 SUPERFAMILY ARM repeat 128 416 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0192 Tpr-Chr3 2405132 2407155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0192 30 436 U-box Gene Family AT5G37490 47.229 4.50e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0192 - - gmx:548086 582.022