Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0189 ATGACTAGAAAAAAGGTGAAACTCGCATTCATAATCAATGATTCTGCGAGGAAGGCGACATTCAAGAAAAGGAAGAAAGGTCTAATGAAAAAGGTTAGTGAACTTAGTACTCTTTGTGGAATTGATGCTTGTGCTATAATTTATAGTCCATACGATCCTCAGCCAGAGGTTTGGCCATCTCCATTAGGAGTCCAAAAGGTACTTTCAAAATTTCGAAGAATGCCCGAATTGGAGCAAAGTAAAAAGATGGTGAATCAAGAGAGTTTCTTGAGGCAGAGGATTCAAAAGGCGAAAGATCAATTAACAAAACAAAGAAAGGATAATAGAGAAAAGGAAATGACCCAATTAATGTTTCAATATCTTAGTGCTGATAAAATTATGCCGAATATAAGTATGGTTGATTTGAATGATATGGCATGGTTGATTGATCAATATTTAAAAGATATCAATAGAAGGATTGAATCATTAACCAAGAATGGTCAGGGTCAAGGTCAAGGTCAAGGTCAACCTCAAATGGTAGCACCAACAATGGCGATTAATGGTGTGGCTAAGATTGAAGATAATGGACAAGGGAGTAATGGACATGGTAATAATGTTTTGGATATGAACATGGATGCTATGCAAAAACAACATTGGTTTATGAATTTGGTGAATCAAGGTGGTGGTGGTGATGAGGCAGCTCCTTTGAGTGATGTTAATAATCACCAAAATGGCTTTTGGCAAAACCAATTTTTCCATTGA 741 0.3644 MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSPLGVQKVLSKFRRMPELEQSKKMVNQESFLRQRIQKAKDQLTKQRKDNREKEMTQLMFQYLSADKIMPNISMVDLNDMAWLIDQYLKDINRRIESLTKNGQGQGQGQGQPQMVAPTMAINGVAKIEDNGQGSNGHGNNVLDMNMDAMQKQHWFMNLVNQGGGGDEAAPLSDVNNHQNGFWQNQFFH* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0189 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 212 - -
Tpr3g0189 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Tpr3g0189 246 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tpr3g0189 246 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tpr3g0189 246 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Tpr3g0189 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 212 - -
Tpr3g0189 246 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr3g0189 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g0189 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g0189 246 Coils Coil 87 114 - -
Tpr3g0189 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0189 Tpr-Chr3 2377566 2378944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0189 1 185 Type I MADS-box Gene Family AT5G48670 58.163 1.13e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g0189 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0189 - - gmx:100813231 377.096