Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0180 ATGTCGCGCGAGAAGCTAGCCGGCTTATCTCTCGAGGACATCTTAGCCAATCAAAAAAGAGCCAACCCTGTACAACCGCCAAGCCAACCACCACCTCCTAAAAGCCGAACCCTCATAGACATCATCAAAGAAGACGAAACCAACAAAAAGGATCGCAGATCCTGGAAAGCCTTCAAGGATAAGCTTCGGCTCAAGCGCGCTGGCTCTGCTTGGACATCATCAATTCACATTCCAACATCAGATATTCCAATCCAAAATCCAAACAGCAGAACCTTTTCCCAATTCGGTCGTCGTGACTCAGTTCGAGTGCAAAGTCTCCAGGACTCGGACATGTCAGCTCAGGCCATGACTCACCAAGTGGAAGACCTTGATCCGTCAAATGAATCCAATGCTCCAGTTTCTAAACCACAATTCACTCGCAAGAGCTCAACCCGTTTAACAGGAGATTCCCCCGAGAGTTTGGTCGGTGGAAGAAATCTTCGAACACTCTCACGCACGAATTCCTCCAGTGTATCATCAGAGCCATTTCGAAGAGAGCGTGTGGTGACTTTTCGAGATAGCTTTGACGATGATGAGCCTGGTGATGATAGCCTGGAGACAAGCAGCAGAGGGTTATCAGCGAGGGAGGCGGTGGCGGCACAGGAGGCGGCAGAAGCTGCGGCAGAGGAGGAGGAGGCTGAAGCGGGACCTCCAACAATGTCGTTGATGGATTTGTTAGGGGAGACCGATAGAGAATTGGGGTTGGAAGGGTCGAGGTATATATTGAGTGATGAAGATGAAGATGATGATTATTATGATGATGATGAAGAAGATGAAGATGGAGAAAGTGCTTTGGAACAAACTTGTTGTATTTGTATGGTGAAGCATAAGGGTGCTGCATTGGCAGCTTGTGGTCATAGTTTCTGTAGGATGTGTTCAAGGGAGCTTATGGTTGCTAAGGGAAATTGTCCACTTTGTAATAATTTCATTTTAGAGATTCTTGACATTTTTTGA 993 0.4713 MSREKLAGLSLEDILANQKRANPVQPPSQPPPPKSRTLIDIIKEDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPIQNPNSRTFSQFGRRDSVRVQSLQDSDMSAQAMTHQVEDLDPSNESNAPVSKPQFTRKSSTRLTGDSPESLVGGRNLRTLSRTNSSSVSSEPFRRERVVTFRDSFDDDEPGDDSLETSSRGLSAREAVAAQEAAEAAAEEEEAEAGPPTMSLMDLLGETDRELGLEGSRYILSDEDEDDDYYDDDEEDEDGESALEQTCCICMVKHKGAALAACGHSFCRMCSRELMVAKGNCPLCNNFILEILDIF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0180 330 MobiDBLite consensus disorder prediction 157 176 - -
Tpr3g0180 330 MobiDBLite consensus disorder prediction 1 52 - -
Tpr3g0180 330 Coils Coil 207 227 - -
Tpr3g0180 330 PANTHER OS01G0917900 PROTEIN 3 330 - -
Tpr3g0180 330 MobiDBLite consensus disorder prediction 72 150 - -
Tpr3g0180 330 ProSiteProfiles Zinc finger RING-type profile. 282 320 IPR001841 -
Tpr3g0180 330 PANTHER OS01G0917900 PROTEIN 3 330 - -
Tpr3g0180 330 SMART ring_2 282 319 IPR001841 -
Tpr3g0180 330 CDD RING-HC 282 319 - -
Tpr3g0180 330 Pfam Zinc finger, C3HC4 type (RING finger) 279 323 - -
Tpr3g0180 330 MobiDBLite consensus disorder prediction 38 52 - -
Tpr3g0180 330 SUPERFAMILY RING/U-box 281 326 - -
Tpr3g0180 330 MobiDBLite consensus disorder prediction 66 208 - -
Tpr3g0180 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 330 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0180 Tpr-Chr3 2274253 2278643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0180 6 330 C3H Transcription Factor Family AT3G07120 35.440 4.48e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0180 - - gmx:100795449 360.918