Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0169 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGTTTGAAGAAAGGACCATGGACTGCAGAGGAAGATAAAAAGCTCATAAATTTTATTCTTACTAATGGCCAATGTTGTTGGAGAGCTGTTCCTAAGTTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGTAGATTGAGATGGACAAATTACCTAAGGCCAGACTTAAAGAGAGGACTTTTATCAGAATATGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAAATTGCTTCTCATCTGCCGGGACGAACCGATAATGAGATTAAGAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCAGTTACACACAAGTTACTCCCAAATGCAATTGATCAAACAAAATGTGAAAAACAACAACAATTGCAAGAACAACAAAATCAACAAGAATCTTCTTCACCTATTGAACATGACACAAAAGTTGAAAATGAGAATGACAAAAACAAGGAACCTCAAAAGCAAGAAACATCCTTTGAATCATCAACAATCAATGAAGCTAAAGAACAAGACCAAGTTATGACACCACTTTTTGATTCATTGGAACTAATGAATGAGTTCTTAATAGAAGAAGTTCCAATAATAAACTCAAATGAAATTCTAGTTCCATGTGTTCCTTCATCTTCATCAAACACAACATCAACATCATCATCTTCAAATTCAAATTCATCTAACTTCCTTGAAGATTTGCTTCTCCCTGATTTTGATTGGTCACATAATTTTAATGTTAATAATAATATTGAAAATAATAACTTTAATGAAAATAGTAATAATAATATTAATATGACATTATGGGATGATGACTTTATTAGAAGTTGGGACTTTGTAATCAATGATGATGATGATGGTGACAGAAAGCAAGTGTTTGAGGCTCCTCATAATCAGTATCCAAAAGTGATTATGGATTCAGAAATATGGGCCTATGGAATGTTTTAG 999 0.3303 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKLLPNAIDQTKCEKQQQLQEQQNQQESSSPIEHDTKVENENDKNKEPQKQETSFESSTINEAKEQDQVMTPLFDSLELMNEFLIEEVPIINSNEILVPCVPSSSSNTTSTSSSSNSNSSNFLEDLLLPDFDWSHNFNVNNNIENNNFNENSNNNINMTLWDDDFIRSWDFVINDDDDGDRKQVFEAPHNQYPKVIMDSEIWAYGMF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0169 332 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Tpr3g0169 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr3g0169 332 MobiDBLite consensus disorder prediction 157 176 - -
Tpr3g0169 332 MobiDBLite consensus disorder prediction 177 191 - -
Tpr3g0169 332 MobiDBLite consensus disorder prediction 137 156 - -
Tpr3g0169 332 SMART sant 66 114 IPR001005 -
Tpr3g0169 332 SMART sant 13 63 IPR001005 -
Tpr3g0169 332 Gene3D - 71 116 - -
Tpr3g0169 332 CDD SANT 16 61 IPR001005 -
Tpr3g0169 332 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 305 - -
Tpr3g0169 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr3g0169 332 PANTHER MYB TRANSCRIPTION FACTOR 1 305 - -
Tpr3g0169 332 Gene3D - 11 67 - -
Tpr3g0169 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr3g0169 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr3g0169 332 CDD SANT 74 112 IPR001005 -
Tpr3g0169 332 MobiDBLite consensus disorder prediction 137 192 - -
Tpr3g0169 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr3g0169 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr3g0169 332 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0169 Tpr-Chr3 2096069 2098572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0169 1 301 MYB Transcription Factor Family AT1G66230 55.556 2.06e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g0169 Myb_DNA-binding 9.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0169 K09422 - gmx:100803624 484.567