Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0166 ATGGCTTCTTCATTGGATATTTCACTTGATGATAGAATTAAGAACAACAAGAGTATCCGAGGCAGAGGAGGAGGTAGAGGACGTGGCAAAGCCCTTTCTGGCCGTGGAAGTGGGACTGTAGGTGGTGGAAGAAGGACTGGTGCTGTTAATGGGAGAAGAGTGACTGGTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGGCTTTTCCATGGCAGAGCGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATACAAGGAGTAGAACTTGACACAAAGTTGTATGTTTCAAACTTAGACCGAGGAGTTACCAATGAAGACATACGGGAACTTTTCTCCGAGCTTGGGGAGTTGAAGCGCTATGCTGTTCATTATGATAAGAATGGAAACCCAACCGGTTCGGCTGAAGTTGTCTATAATAGAAGAAGTGATGCATTTGCTGCTCTCAAACGGTATAACAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGAACAAATTCTGAATTGCCTGTAACTGCACGGGTTAATGTCTCTGCGATGAATGGACAGAGAAAGAGGACAGTTGTAATGACGCCTAGAGGCGGAAGAGGTGGAGGTGCTGCTGTGCTAAATCGTGGTGCTGGCTGGGGACGCCGTGGTGGCTCAAGGGGTGGTAGTGGTAACGTGCGTGGCAGAGGCCGAGGCCGCCCTGGCAGGGGTGGAGGTCGTGGTCGTGGAAGAAAGGATGGAGTTGAGAAGTCAGCTGAGCAACTTGACAAGGAACTAGAGACCTATCATGCAGAGGCTATGAACATCTCATGA 879 0.4835 MASSLDISLDDRIKNNKSIRGRGGGRGRGKALSGRGSGTVGGGRRTGAVNGRRVTGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTKAFPWQSDLFEDSLRAAGIQGVELDTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGNPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMTPRGGRGGGAAVLNRGAGWGRRGGSRGGSGNVRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0166 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Tpr3g0166 292 Gene3D - 109 190 IPR012677 -
Tpr3g0166 292 MobiDBLite consensus disorder prediction 16 59 - -
Tpr3g0166 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Tpr3g0166 292 Coils Coil 267 292 - -
Tpr3g0166 292 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 291 - -
Tpr3g0166 292 CDD RRM_THOC4 114 188 - -
Tpr3g0166 292 Pfam C-terminal duplication domain of Friend of PRMT1 234 286 IPR025715 -
Tpr3g0166 292 SUPERFAMILY RNA-binding domain, RBD 108 188 IPR035979 GO:0003676
Tpr3g0166 292 SMART rrm1_1 115 187 IPR000504 GO:0003723
Tpr3g0166 292 SMART FoP_duplication_2 219 292 IPR025715 -
Tpr3g0166 292 MobiDBLite consensus disorder prediction 233 274 - -
Tpr3g0166 292 PANTHER THO COMPLEX SUBUNIT 4C 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0166 Tpr-Chr3 2045018 2049697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0166 116 188 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 1.13e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0166 K12881 - gmx:100801491 352.443