Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0122 ATGGACAGTCCTCATTCACCTTCTTCCTGTTCATCTTCTTCATCCACCTGTTCATTTGAAGGACAAACCACCGACACAATCTATTTAGAAACGGAGGAGCCACAAACGCCGTTAGCCGTTCGCCGTGCACTTCAGCTTCTCAAATCCGGCGTGCCGGAGTTGCGGATTCAAGCCGCGCGTGATATACGGAAACTCACCAAAACTTCACACCGATGTCGGCGTCAGCTCTCTGAAGCTGTCGGTCCACTCGTTTCTATGCTCCGAGTTGACTCTCCCGAGTCACATGAACCTGCGCTCCTTGCTTTGCTTAATCTCGCTGTTAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCCGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCACAAAATACAAATCTGCAGGCGTCTGCAACTGCAGCTTTGCTCACACTATCAGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGCGCAATTCCCCTTCTTGTGGAGATTCTTAAAGATGGAAGCCCACAGGCAAAAGCCGATGCAGTTATGGCTCTCGCTAATTTATCAACATATCCTGATATTCTTAGCATTATTCTCAAAACAAATCCAATCCCTTTCATAGTTGATATCCTCAAAACTTGCAAAAAGTCCTCAAAAACAGCTGAAAAATGTTGTGCTTTGATAGAACCCTTGGTGGATTACGACGAATGCAGAACTTCCTTGATATCTGAGGAAGGTGGGATTCTTGCAGTTGTGGAGGTTCTCGAAAACGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGGGCACTACTGACAATGTGCCAGAGTGATCGATGTAAATACAGGGAACCAATTCTTAAAGAAGGTGTGATTCCAGGCTTACTCGAGCTCACTGTTCACGGAACACCAAAGTCTCAGACAAAAGCTCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCCGACACTCTCGAGAATATAGTATGCAACATCATATCTCAAATTGATGGGGAAGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGACATTTACAGCAAAGGGCACTCGTATGCACCCCAAGTGATCTTCCCATAGCTGGCTGTACTTCTGAAGTTTCTTTTAAGTAA 1185 0.4456 MDSPHSPSSCSSSSSTCSFEGQTTDTIYLETEEPQTPLAVRRALQLLKSGVPELRIQAARDIRKLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSQNTNLQASATAALLTLSASSTNKPIISACGAIPLLVEILKDGSPQAKADAVMALANLSTYPDILSIILKTNPIPFIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTSLISEEGGILAVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILKEGVIPGLLELTVHGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGEDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCTSEVSFK* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0122 394 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 377 - -
Tpr3g0122 394 PANTHER U BOX DOMAIN-CONTAINING 22 377 - -
Tpr3g0122 394 Gene3D - 155 358 IPR011989 -
Tpr3g0122 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Tpr3g0122 394 Pfam Armadillo/beta-catenin-like repeat 110 148 IPR000225 GO:0005515
Tpr3g0122 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 189 IPR000225 GO:0005515
Tpr3g0122 394 SUPERFAMILY ARM repeat 39 344 IPR016024 -
Tpr3g0122 394 SMART arm_5 234 275 IPR000225 GO:0005515
Tpr3g0122 394 SMART arm_5 109 149 IPR000225 GO:0005515
Tpr3g0122 394 SMART arm_5 66 107 IPR000225 GO:0005515
Tpr3g0122 394 SMART arm_5 150 190 IPR000225 GO:0005515
Tpr3g0122 394 Gene3D - 40 154 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0122 Tpr-Chr3 1500059 1503990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0122 40 317 U-box Gene Family AT2G23140 32.500 5.21e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0122 - - gmx:100809684 620.157