Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0092 ATGTCTACGGATACAACAACAACGACGTCGTATTGGTGTTATAGATGCAGTCGTTTTGTAAGATTAGCGACACAAGAAACGGTTATTTGTCCCGAATGCGACGGTGGTTTTCTCGAACAAATCGATCAACCGTCGCGTTCTCTTCAAATTGATGCTCGTCGGAGACGTTTTCCGGCTGCAGCTATGTACATGATCGGTCAACGTCCTAGTTCCGATCATACTTTCCGACCATCTTCTATCAGAAGAAATCGTCGTAACGGTGGTGAACGGTCTCCTTTCAATCCGGTTATTGTTCTCCGCGGCGGTGGAACAACAACGACAGAGGTAACAGAAGCTGGAGCTGGTGGAGAGAGTCGTGGATTTGAGCTTTTTTATGATGATGGTGCTGGTTCTGGTTTAAGACCTTTACCTCCAAGTATGTCAGAGTTTCTTCTTGGATCTGGATTTGATAGATTGTTAGAACAGCTTTCTCAGATTGAGATTAATGGAATATCGAGATTCGAACATCCTCCGGCTTCTAAAGCTGCAGTTGATTCATTACCAACTATTGAAATTGATAATACTCATTTGGAAATGGAACCACACTGTGCTGTTTGTATGGAGGCTTTTGAATTTGGTACTGTTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGATTGTATTTTACCTTGGCTTGCACTTCATAATTCGTGCCCGGTTTGTCGCCATGAATTACCGTCTGATGCTGATGGTGTAGCTAATAATCAACCACAATTACAGTCGCAGTCACAGGTGCAATCGGTTGGTTTAAATGAAGAAGAGAGTAATATTGGGTTGACTATTTGGAGATTACCAGGTGGTGGTTTTGCCGTGGGGAGATTTTCGGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTTGTTTATACTGAAATGGATGGAGGGTTTAATAATGGTGGTGAACCTAGGAGGATTTCTTGGTCTTCTAGAGGGGGTAGAGGGAGGGAGAGAAGTGGCGGTTTGAGAAGGTTTTTCGGGAGTTTCTTTGGTTGTTTTAATAATGGTGGGGTTGGGAATCAGCTTACTGTTTCGAGTAGAGAGGCGAGATCAATGAGGACTAATTCGTCTCATTCTTCAAATATGGATCCCTCTCCGCGTTCGCGAAGGACTTGGTCTATGGATGTTAACAGTGGAATGAGATCATGGTAA 1194 0.4372 MSTDTTTTTSYWCYRCSRFVRLATQETVICPECDGGFLEQIDQPSRSLQIDARRRRFPAAAMYMIGQRPSSDHTFRPSSIRRNRRNGGERSPFNPVIVLRGGGTTTTEVTEAGAGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRFEHPPASKAAVDSLPTIEIDNTHLEMEPHCAVCMEAFEFGTVVREMPCKHIYHPDCILPWLALHNSCPVCRHELPSDADGVANNQPQLQSQSQVQSVGLNEEESNIGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGGRGRERSGGLRRFFGSFFGCFNNGGVGNQLTVSSREARSMRTNSSHSSNMDPSPRSRRTWSMDVNSGMRSW* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0092 397 SMART ring_2 196 236 IPR001841 -
Tpr3g0092 397 Pfam Protein of unknown function (DUF1117) 272 374 IPR010543 -
Tpr3g0092 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 243 IPR013083 -
Tpr3g0092 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 6 344 - -
Tpr3g0092 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 344 - -
Tpr3g0092 397 Pfam zinc-ribbon 9 41 IPR039525 GO:0061630
Tpr3g0092 397 MobiDBLite consensus disorder prediction 68 91 - -
Tpr3g0092 397 CDD RING-H2_RNF126_like 196 237 - -
Tpr3g0092 397 MobiDBLite consensus disorder prediction 360 397 - -
Tpr3g0092 397 Pfam Ring finger domain 195 237 IPR001841 -
Tpr3g0092 397 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Tpr3g0092 397 SUPERFAMILY RING/U-box 176 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0092 Tpr-Chr3 1127072 1128908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0092 133 251 C3H Transcription Factor Family AT1G26800 38.655 3.62e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0092 - K11982 gmx:100807324 532.332