Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0084 ATGGCTAATCGTTGGTGGACTGATAATGCGGCAATGAGTCAGAGAGAAGATTTGAAAAGAGAAGATTTGATGGAAAACAACAACAATGCTGCGAACTCAACTCCAACTAATAGCAGCAGCAACAACAACAACGAGGAAGATGATAACAACAACAATGATGAACAAAACCCATCTGAGCCAGGAAGTAGTAGCGGTGGTCGGAGGCCACGTGGCAGACCACCAGGTTCTAAGAACAAACCCAAACCGCCTATTGTTATAACAAAAGAATCTCCCAACGCGCTTCGAAGCCACGTGTTGGAAATCAGCAGTGGTAGTGATGTGGCGGAGAGTATAGCAACTTTTGCTAACCGGCGTCACCGCGGTGTGTCGGTTTTAAGTGGGAGTGGCATTGTTGCTAATGTGACGCTTAGGCAACCTGCTGCTCCTGGTGGTGTTATTACTCTTCATGGAAGATTCGAGATACTGTCGCTTTCGGGGGCTTTTTTGCCTTCTCCTTCGCCGGCTGGTGCTACTGGATTGACTGTTTATTTAGCTGGTGGTCAGGGGCAGGTTGTTGGTGGTGCTGTGGCGGGGTCTTTGATTGCTTCTGGACCTGTGATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAAAGGTTGCCATTGGAAGATGAACAAGGTGGTGAACAAGAGGAAATGCAAGTTCAACAACAACAACAATCTGGTGTGAATTCAGCAACCGTTGCAGTTACTTCTTCTCAAGGTTTGGAATTAGGTGAACATCAACAAGTTTCAATGCCTATGTATAATTTGCCACCAAATTTGATGCATAATGGTACTCAAATGCCACATGATGTGTTTTGGGGTCCTCCACCTCCTCGTCCTCCTCCTCCTTCTTTCTGA 885 0.461 MANRWWTDNAAMSQREDLKREDLMENNNNAANSTPTNSSSNNNNEEDDNNNNDEQNPSEPGSSSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSPAGATGLTVYLAGGQGQVVGGAVAGSLIASGPVMVIAATFANATYERLPLEDEQGGEQEEMQVQQQQQSGVNSATVAVTSSQGLELGEHQQVSMPMYNLPPNLMHNGTQMPHDVFWGPPPPRPPPPSF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0084 294 Gene3D - 94 236 - -
Tpr3g0084 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Tpr3g0084 294 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Tpr3g0084 294 CDD DUF296 95 177 IPR005175 -
Tpr3g0084 294 MobiDBLite consensus disorder prediction 1 91 - -
Tpr3g0084 294 PIRSF ESCAROLA 8 294 IPR014476 GO:0003680
Tpr3g0084 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 291 IPR014476 GO:0003680
Tpr3g0084 294 MobiDBLite consensus disorder prediction 25 46 - -
Tpr3g0084 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Tpr3g0084 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0084 Tpr-Chr3 1058028 1060214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0084 1 291 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 54.430 1.02e-77 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0084 - - gmx:102667174 317.005