Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0050 ATGAAAAAGATGGGGAGAGTGAAGCTTCAAATCAAGAAAATTGAGAACACAACGAATAGACAAGTCACTTTCTCGAAGAGGAGAAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTTGCTCTCATCATGTTTTCTCCATCGGGGAGAGCCACTCTCTTCTCGGGCAATAAAAGCTTCGAAGAAATTCTAGAACGATATATAAATCTTTCGGACACTGAACGTGGAAAGCTGCATAATGAAGAGAACATTCGAAAGCTTCTCCGTAAATTGAAAGTGGAAACCGATCAAATTTGTCAAGTTCGTAGCCCTATGGTTACAGACCCTCAACTCAAGGAGGTTCAAAGAGAAATTTTAATTTGGAAGACTCAATTGGAAGAGATGAAGAATCGACTAAGGATATTTGAAGGAGATCCTTCTGAGATCACTACATTGTGTGAAGCTGAATATCGCGTACAAGTACTTCAGGAAACTCTAAAACAAGTGCAACTGCGAAAATGCTTTTTGGAGGAAGAGCAAATTTCTCATGCATCTCCACAGGTACATCTTACAAAAACTGTAGATGTAGATGGCTTTGTTGCTGGAACTACAGAGAATGCATTAAGCTGGTTTCCACAAGGAGATACCAACGATCAGATTCTGAACTTTGTTAATGCTTATGGCCCTCCTCCTCTCAGCGATCAACAAGCAATGAGTACTGTTGTTAATATGGTAACGCCAACTTCGACCCTTCTGCATTCTGGAAACATCAATGGCGATTGTCAAATTAGTCCCGGGAATGGTACAGACGCTGAAATTAATAATACACCTCAGTTTGGACAAATTACAGACAACAATTTGTCCTCTTGGGAGCACCTCCACCATTTAGAGAATGGTGCATTATCAGTTGCAGAGACAAGAGACGGACAACTACTGGAACAATATCTTTCTCAAGTTGCCATGGCAAATGTTTTAATGAGTAATCAAGATCAACTTCAAATATGA 1002 0.3952 MKKMGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATLFSGNKSFEEILERYINLSDTERGKLHNEENIRKLLRKLKVETDQICQVRSPMVTDPQLKEVQREILIWKTQLEEMKNRLRIFEGDPSEITTLCEAEYRVQVLQETLKQVQLRKCFLEEEQISHASPQVHLTKTVDVDGFVAGTTENALSWFPQGDTNDQILNFVNAYGPPPLSDQQAMSTVVNMVTPTSTLLHSGNINGDCQISPGNGTDAEINNTPQFGQITDNNLSSWEHLHHLENGALSVAETRDGQLLEQYLSQVAMANVLMSNQDQLQI* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0050 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 58 IPR002100 GO:0003677|GO:0046983
Tpr3g0050 333 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 4 304 - -
Tpr3g0050 333 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Tpr3g0050 333 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Tpr3g0050 333 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 304 - -
Tpr3g0050 333 SUPERFAMILY SRF-like 5 87 IPR036879 GO:0003677|GO:0046983
Tpr3g0050 333 CDD MADS_MEF2_like 5 78 IPR033896 GO:0000977|GO:0045944
Tpr3g0050 333 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Tpr3g0050 333 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Tpr3g0050 333 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Tpr3g0050 333 Coils Coil 117 137 - -
Tpr3g0050 333 Gene3D - 16 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0050 Tpr-Chr3 539428 542539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0050 4 227 Type I MADS-box Gene Family AT1G22130 42.194 1.71e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g0050 SRF-TF 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0050 - - mtr:MTR_3g102570 486.878