Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0047 ATGGCTAGTAGTAACAACCAAAGTGTCTCTTCATCTAGGAAGATGACATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGACACACGCAACAATTTCACTGATCACCTTTTTGGTGCTTTTCATAGAAAAGGCATTTTTGCCTTCAAGGATGATATAAAGCTCAAGAAAGGGGAAGATATATCATCTGACCTTCTAAAAGCCATTGAAGGATCTCAAATTTTGATTGTTATTTTCTCAAGAAACTATGCTTCTTCCACATGGTGTTTGCGGGAACTAGAAAAAATTGCTGAATGCAAAGTATTAGGACAACCTGTGCTACCTATTTTCTATGATGTGAGTCCATCTGAGGTACGAAAGCAAAGCGGAGATTTTGAAAAAGCCTTTATGGAGCATGAAGATAGGTTCAAAGGAAACTTAGAGGAAGTGCGAAGATGGAGGAGAGCTGTAACACAAGTAGCCAACCTCTCTGGTTATGATGTAAAGGATAAGCCACAATATGCAGAGATTGAAAAAATTATTAAAGTGGTAACAAGCTTATTGGGTCACAAATTTTCAACATTACCTGACGATATAGTTGGGATGCACTCACAAGTGGAAGAATTAGAAAACCTTATGAAGTTGGACTCCGATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGAGTGGAATAGGGAAGACAACTCTTGGTAAAGCTTTGTATGGAAGAATCTCTAATCAATTTGAAGCTTGCTGCTATATTGATGATGTAAGTAAAACTTATGGAGGTGATGGCCCAGTAGGAGTGCAAAAGCAACTTCTTTGTCAAACTCTAGAAGAAGAAAATCTTCAGATATGCAATCATTATATGGCATCTAATTTGATTCGAACTAGGCTATGTGAAATAAAATCCCTTGTAATCCTTGATAATGTTGATCAAGTTGAACAACTGGATAAATTAGCCATGAAACGTGAGTGGCTAGGCACTGGGAGCAGACTTGTCGTAATTTCTAGAGATTGTCATATCTTGAGACAGCATGGAGTAGATGAAGTTTATCAAGTTGAACTCTTGGATCGTAGTAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGACCGGTTACACAGACTTGACAAATGATGTACTAAGATATGCCAATCGCCTTCCATTAGCAATTAAAGTGTTGGGCTCATTTTTGTATGGTCGAAATGTGTTAGAATGGAGAAGTGCATTGGAAAGATTAAGAGAGAAACCAATGGCAGGTATTACAGATGTACTCCGAATTAGTTTTGATGGGCTAGAGGATACAGAAAAGGATATATTTCTTGATATTGCTTGTTTTTTTAATCGAGAAATTGAGACATATGTGAAGAAACTGTTAGATATTCGTGGATTTCATCCTGAAATTGGTTTAGGAGTTCTCCATGATAAGTCATTCATTACTTGTGAGCGTGGGTTTATTTTTATGCATGGTTTATTCAAAGAACTTGGCAAGAGTATCGTTAGAGAAAAATCACCAAAAGAACCAAGAAAGTGGAATAGATTGTGGGACTACAAGGATGTCCACAAAGTTATGTCAGAAAACATGGAAACAAAAAACCTTGAAGCCATAGTTCTGCAGCCTGATGCTGATAACATTGATGAAATACAAGCAATGTCAACATTGAGGGCAGAAAGTTTAGCACAAATGAATCGCCTTAAATTGCTCATGCTGTGGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTATATTGGGATAAATATCCTTTCACTTGTTTGCCATCGAGTTTTGAGCCGGATAAACTTGTTGAACTGTTCCTGCCTCATAGCAACATCAGGCAACTATGGGAGGGCACAAAGCCTCTTCATAATTTGACACGTCTTGATCTCTCTCACTCGAAAAATCTTATTATGATGCCAAGTTTTTTGGAGATTCCAAATCTCGAGTTGCTAGATCTTGAAGGATGCATAAAACTTGTGCAGATTGATCCATCCATTGGCATCTTAAGAAGGCTTTCCGAATTAAATTTGAAAAATTGTACAAATCTTGTTAGTATTCCTAACAAAATTTTTGGTCTGAGTTCCCTTAAATATCTAAATATCTCAGGCTGCCCAAATTTTTCGTTAGAGGGACAAAGAAAAATAGAACATTTGGAGATGCTTGAAAACAACAAAATTACTACCGAATACCAACCAATATCCTTCATCTACAAAGTTTTAATGCCGCCCTTCCGATTTTTAAATTTCCAAAAAAGTAGAGATCCAATTGGTTTATTGTTACCTTTGGTGTCTCTTTTGTCATGTTTACAACATCTAGACCTAAGTTTCTGCAATCTTGTTCAAATCCCTAATACTATTCGGTGGTTACACTGCTTAGAAACACTAAATTTGAGGGGTAACAATTTTGTTACATTACCTAGCTTCAAAGAACTTTTTAAACTTAGAGAATTGAACTTGGAGCACTGTAAGCAGCTTAAATATTTACCTGAACTCCCATCAAAAACTGTCTTGCCAGCAAGAGAAACATATTATATTGTTGTATTAAATATTTTTGGTTGCCCCAGTTTAACTGACATAGAATGTTGTTATAGAATGGTTTTATCTTGGATTATACAACTCCTTCAGGTGCACATGAAATCCGATCTCCCAATTAATCGGATTGAGATTGTCATTCCTAGAATTGAAATTCCAATGTGGTTTAATAAACAAAATGTGGGCAGTTCAATAAGCATGGAACCATTACCCAATATGGATGACCAGAATTTCATAGGCGTTGCTGTTGCTTGCTGCATAACACGTGTAGCACATGATGATCCAACTAGTTTAGGTTATGAAATGCCACCTAGGATTCGGTTTGATATTAAAGTTAAAGGAGGGTGGTGGTGTTGTTCCCATATTAACATACCTCAGGGAAAAGATCTCGTTACAGTTGATTTACAACACCTGTGTCTAATTTTTATCACTAGGGAATATCTTATTCGGTTTGATATTACTGAATTGGAAGTTGCTGTTCGCCATCCCTGTGATTCGCATGGTTTCCATTTGGAGGTAAAAAATTGTGGTTATCGTTGGATATTTCAGGAGGATCTGGAGAAATGA 3120 0.367 MASSNNQSVSSSRKMTWKYDVFVSFRGDTRNNFTDHLFGAFHRKGIFAFKDDIKLKKGEDISSDLLKAIEGSQILIVIFSRNYASSTWCLRELEKIAECKVLGQPVLPIFYDVSPSEVRKQSGDFEKAFMEHEDRFKGNLEEVRRWRRAVTQVANLSGYDVKDKPQYAEIEKIIKVVTSLLGHKFSTLPDDIVGMHSQVEELENLMKLDSDDDVRVVGICGMSGIGKTTLGKALYGRISNQFEACCYIDDVSKTYGGDGPVGVQKQLLCQTLEEENLQICNHYMASNLIRTRLCEIKSLVILDNVDQVEQLDKLAMKREWLGTGSRLVVISRDCHILRQHGVDEVYQVELLDRSNALQLFCRKAFKSDDIMTGYTDLTNDVLRYANRLPLAIKVLGSFLYGRNVLEWRSALERLREKPMAGITDVLRISFDGLEDTEKDIFLDIACFFNREIETYVKKLLDIRGFHPEIGLGVLHDKSFITCERGFIFMHGLFKELGKSIVREKSPKEPRKWNRLWDYKDVHKVMSENMETKNLEAIVLQPDADNIDEIQAMSTLRAESLAQMNRLKLLMLWNLNFSGSLNFLSSELGYLYWDKYPFTCLPSSFEPDKLVELFLPHSNIRQLWEGTKPLHNLTRLDLSHSKNLIMMPSFLEIPNLELLDLEGCIKLVQIDPSIGILRRLSELNLKNCTNLVSIPNKIFGLSSLKYLNISGCPNFSLEGQRKIEHLEMLENNKITTEYQPISFIYKVLMPPFRFLNFQKSRDPIGLLLPLVSLLSCLQHLDLSFCNLVQIPNTIRWLHCLETLNLRGNNFVTLPSFKELFKLRELNLEHCKQLKYLPELPSKTVLPARETYYIVVLNIFGCPSLTDIECCYRMVLSWIIQLLQVHMKSDLPINRIEIVIPRIEIPMWFNKQNVGSSISMEPLPNMDDQNFIGVAVACCITRVAHDDPTSLGYEMPPRIRFDIKVKGGWWCCSHINIPQGKDLVTVDLQHLCLIFITREYLIRFDITELEVAVRHPCDSHGFHLEVKNCGYRWIFQEDLEK* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0047 1039 Gene3D - 15 178 IPR035897 -
Tpr3g0047 1039 SMART till_3 18 156 IPR000157 GO:0007165
Tpr3g0047 1039 Pfam NB-ARC domain 206 420 IPR002182 GO:0043531
Tpr3g0047 1039 SUPERFAMILY L domain-like 558 880 - -
Tpr3g0047 1039 SMART LRR_typ_2 796 821 IPR003591 -
Tpr3g0047 1039 SMART LRR_typ_2 676 700 IPR003591 -
Tpr3g0047 1039 SMART LRR_typ_2 773 795 IPR003591 -
Tpr3g0047 1039 Pfam Leucine Rich Repeat 702 716 IPR001611 GO:0005515
Tpr3g0047 1039 Pfam Leucine Rich Repeat 776 791 IPR001611 GO:0005515
Tpr3g0047 1039 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Tpr3g0047 1039 Pfam C-JID domain 899 1038 IPR045344 -
Tpr3g0047 1039 Gene3D - 351 434 IPR042197 -
Tpr3g0047 1039 Pfam TIR domain 18 177 IPR000157 GO:0007165
Tpr3g0047 1039 PRINTS Disease resistance protein signature 216 231 - -
Tpr3g0047 1039 PRINTS Disease resistance protein signature 292 306 - -
Tpr3g0047 1039 PRINTS Disease resistance protein signature 385 399 - -
Tpr3g0047 1039 PRINTS Disease resistance protein signature 627 643 - -
Tpr3g0047 1039 Gene3D - 179 344 IPR027417 -
Tpr3g0047 1039 Gene3D Ribonuclease Inhibitor 752 872 IPR032675 -
Tpr3g0047 1039 ProSiteProfiles TIR domain profile. 17 181 IPR000157 GO:0007165
Tpr3g0047 1039 SUPERFAMILY "Winged helix" DNA-binding domain 422 525 IPR036390 -
Tpr3g0047 1039 Pfam Leucine Rich Repeat 608 627 IPR011713 -
Tpr3g0047 1039 Gene3D Ribonuclease Inhibitor 532 738 IPR032675 -
Tpr3g0047 1039 ProSiteProfiles Leucine-rich repeat profile. 798 819 IPR001611 GO:0005515
Tpr3g0047 1039 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 187 1036 - -
Tpr3g0047 1039 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 187 1036 IPR044974 GO:0006952
Tpr3g0047 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0047 Tpr-Chr3 498729 508870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0047 19 814 WRKY Transcription Factor Family AT4G12020 29.657 6.89e-84 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0047 - - mtr:MTR_4g080777 1471.45