Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0046 ATGGAGACTCGTGCTGCAAGGAAAAGGGCTAACTCAAACACTGAACCAATTGTTTTGAACAACAAAAAACAAAGGGTTGTTTTGGGTGAACTTCCCAATTTATTACCTGATCTTAATTGTTCTGAAAATTTATCCATTGACAAGGTTCAATCTTGGAAAAATCCCAAGGTCAAGAAATCATCAACAGCTGTTTATTTGTTTCCTAATTTTAATTTGGAGAAGCTTTTCGACGACAACAATTCAAAATTTGATGATGAACAAATTGGAGAGCCTTATGCATCTGATATATCCAACTATCTTCGTTCAATGGAGAAAAAGAGAAGACCTTTGGTTGGTTACATTGAGAAAGTTCAGAGAGGTGTTACTTCAAACATGAGAGGAATATTGGTTGATTGGTTAGTTGAGGTTGCTGATGAATACAAGCTTCTCCCAGAAACCCTTCATCTCTCGGTTTCATACATCGATAGGTTCTTATCGATGAACATTATCAACAGATCTAACCTTCAGTTGCTCGGTGTTTCATCTATGCTTATTGCATCAAAGTATGAAGAAATCTCCCCACCAAAGGCTGTAGATTTCCGCCAAATCACTGATAACACCTATCAGTTGAAACAGGTTATTAAGATGGAAGCTGACATACTCAAGTCACTGAATTTTGAAATGGGCAATCCTCATGTTTACACATTTCTAAAGGAGTTTATTGGATCTGCTACTGAAAACCAAAAGGCTTCAAAACTGCAAATGGAATTTCTGTGTAACTATCTTGCTGAGCTAAGCTTGTTGGAATATGAATGTATAAGATTCTTGCCTTCTGTGGTGGCTGCATCGGTTATATTTCTCGCTAGATTTATCATCCGTCCTGATGTATATCCTTGGACTTCATCATTGAGTGAAAGCTTGGGTTATAAATCCAATGAGCTCGAAGAATGTGTTCTCATTTTACATGACTTGTATTTGTCAAGAAGGGCTGCATCATTGAAAGCTGTTAGGGAGAAATACAAACAACATAAGTTCAAATCTGTGGCAAACTTGCCTTCCCCACCGGAGGTACCAAATCATTACTTCGAAGAAGAGTGA 1077 0.376 METRAARKRANSNTEPIVLNNKKQRVVLGELPNLLPDLNCSENLSIDKVQSWKNPKVKKSSTAVYLFPNFNLEKLFDDNNSKFDDEQIGEPYASDISNYLRSMEKKRRPLVGYIEKVQRGVTSNMRGILVDWLVEVADEYKLLPETLHLSVSYIDRFLSMNIINRSNLQLLGVSSMLIASKYEEISPPKAVDFRQITDNTYQLKQVIKMEADILKSLNFEMGNPHVYTFLKEFIGSATENQKASKLQMEFLCNYLAELSLLEYECIRFLPSVVAASVIFLARFIIRPDVYPWTSSLSESLGYKSNELEECVLILHDLYLSRRAASLKAVREKYKQHKFKSVANLPSPPEVPNHYFEEE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0046 358 SUPERFAMILY Cyclin-like 224 348 IPR036915 -
Tpr3g0046 358 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Tpr3g0046 358 SMART cyclin_7 131 215 IPR013763 -
Tpr3g0046 358 SMART cyclin_7 232 316 IPR013763 -
Tpr3g0046 358 Gene3D - 95 343 - -
Tpr3g0046 358 PANTHER CYCLIN-A3-1-RELATED 18 357 - -
Tpr3g0046 358 CDD CYCLIN 125 214 IPR013763 -
Tpr3g0046 358 PIRSF Cyclin_A_B_D_E 2 355 IPR039361 -
Tpr3g0046 358 SMART Cyclin_C_2 224 347 IPR004367 -
Tpr3g0046 358 PANTHER CYCLINS 18 357 IPR039361 -
Tpr3g0046 358 CDD CYCLIN 224 315 IPR013763 -
Tpr3g0046 358 SUPERFAMILY Cyclin-like 84 221 IPR036915 -
Tpr3g0046 358 ProSitePatterns Cyclins signature. 126 157 IPR006671 -
Tpr3g0046 358 Gene3D - 109 222 - -
Tpr3g0046 358 Pfam Cyclin, N-terminal domain 95 221 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0046 Tpr-Chr3 485167 487643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0046 3 357 Core Cell Cycle Gene Families AT5G43080 54.494 1.51e-129 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0046 K06627 - gmx:100787417 416.001