Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0045 ATGGAGACTCGTGCTGCAAGGAAAAGGGCTAACTCAAACACTGAACCAATTGTTCTGAACAACAAAAAACAAAGGGTTGTTTTGGGTGAACTTCCCAATTTACCTGATCTTAATTGTTCTGAAGAAGTTCAATTTTCCAATGAAAAATTTCAATCTCGGAAGAGAGGTGTTTGTTTGTTTGAGAATTTCAAATTGGATAAGATGGTTTTCGGTAACAAAAATACAAGATTTGATGATGAACAGATTGGTGAACCTTATGCATCTGACATATCCAATTATCTTCGTTCAATGGAGAAAAAGAGAAGGCCAATGGTTGGTTATATGGAGAAAGTTCAAAGAGGTGTTACTTCAAACATGAGAGGAATATTGGTTGACTGGTTAGTTGAGGTTGCTGATGAATATAAGCTTCTCCCTGAAACCCTTCATCTCTCGGTTTCATACATCGACAGGTTCCTATCGATGAACATTATCAACAGATCTAACCTTCAGTTGCTTGGTGTTTCATCTATGCTCATAGCATCAAAGTATGAAGAAATCTCCCCACCAAAAGCTGTAGATTTCCGCCAAATTACTGATAACACCTATCAGCTGAAACAGATTATTAAGATGGAAGCTGACATACTCAAGTCACTGAATTTTGAAATGGGCAATCCTCATGTTTACACATTTCTGAAGGAGTTTATTGGATTTGCAACTGAGAATCAAAAGACTTCAAAACTTCAAATGGAATATCTGTGTAACTATCTTGCTGAGCTAAGCTTGTTGGAATATGAATGTATAAGATTCTTACCTTCTGTGGTGGCTGCATCGGTTATATTTCTCGCTAGATTTATCATCTGTCCTGAAGTATATCCTTGGACTTCATCATTGAGTGATTGCTCGGGTTATAAATCGGATGAACTGGAAGAATGTGTTCAGATTTTACATGATTTGTATTTGTCAAGAAGGGCTGCATCATTGAAAGCTGTTAGGCAGAAATACAAACAACAGAAGTTCAAATCTGTGGCAAACTTGCCTGTATGTCCAGAGGTACCAAACCATTATTTTGAAGAAGAGTGA 1059 0.3711 METRAARKRANSNTEPIVLNNKKQRVVLGELPNLPDLNCSEEVQFSNEKFQSRKRGVCLFENFKLDKMVFGNKNTRFDDEQIGEPYASDISNYLRSMEKKRRPMVGYMEKVQRGVTSNMRGILVDWLVEVADEYKLLPETLHLSVSYIDRFLSMNIINRSNLQLLGVSSMLIASKYEEISPPKAVDFRQITDNTYQLKQIIKMEADILKSLNFEMGNPHVYTFLKEFIGFATENQKTSKLQMEYLCNYLAELSLLEYECIRFLPSVVAASVIFLARFIICPEVYPWTSSLSDCSGYKSDELEECVQILHDLYLSRRAASLKAVRQKYKQQKFKSVANLPVCPEVPNHYFEEE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0045 352 CDD CYCLIN 119 208 IPR013763 -
Tpr3g0045 352 Gene3D - 103 216 - -
Tpr3g0045 352 CDD CYCLIN 218 309 IPR013763 -
Tpr3g0045 352 Pfam Cyclin, N-terminal domain 89 215 IPR006671 -
Tpr3g0045 352 Gene3D - 89 337 - -
Tpr3g0045 352 Pfam Cyclin, C-terminal domain 218 339 IPR004367 -
Tpr3g0045 352 ProSitePatterns Cyclins signature. 120 151 IPR006671 -
Tpr3g0045 352 PANTHER CYCLINS 17 351 IPR039361 -
Tpr3g0045 352 PANTHER CYCLIN-A3-1-RELATED 17 351 - -
Tpr3g0045 352 SUPERFAMILY Cyclin-like 218 341 IPR036915 -
Tpr3g0045 352 SMART Cyclin_C_2 218 341 IPR004367 -
Tpr3g0045 352 PIRSF Cyclin_A_B_D_E 3 347 IPR039361 -
Tpr3g0045 352 SUPERFAMILY Cyclin-like 78 215 IPR036915 -
Tpr3g0045 352 SMART cyclin_7 222 310 IPR013763 -
Tpr3g0045 352 SMART cyclin_7 125 209 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0045 Tpr-Chr3 477817 480020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0045 3 351 Core Cell Cycle Gene Families AT5G43080 53.143 3.59e-126 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0045 K06627 - gmx:100793436 409.068