Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0044 ATGGAAACTCGCGCCTCAAAGAAAAGATCAAACACCGCTCAACAACCACCATCTGTCATTGTTCTCAAAAGGCAGAGGGTTGTTTTGGGTGAAATTCCTGATCTCAGTTTTCCCCAATTTCAGCCCAAACAGAAACTCCAAGTGAGGAGAAACCCTAATCTCAACAATTCAGCAACGGATCTACCTTCAATTGATTCCAATTTGGATTTGGATAAGCCAATTTATAACAAAACCAATGCCAAACAGAATACTGATCCTTATGTATCCGATATCTTCAACTATCTTCGCACAATGGAGAAAAAGAGAAGGCCAATGGTTGGTTATATGGAGAATGTTCAAACAGGCATTACTTCAAACATGAGGGGGACATTGGTCGATTGGTTAGTTGAGGTTGCCGACGAGTACAAACTTCTTCCTGAAACCCTTCATCTATCTATTTCCTACATCGATCGGTTCCTATCTATTCAACCTGTCAAAAGATCCAACTTTCAGCTACTTGGTGTTACCTCCATGCTCATTGCATCGAAATATGAAGAAATCACCCCACCCAAGGCTGTGGATTTCTGTGAAATTACTGATAACAGCTATGACTTGGAAGAGGTTATAAAGATGGAAGCTGACATACTCAAGTCCCTAAATTTTGAAATGGGGAACCCTAATGTCACCACATTTCTTAAGAGGTTTGTTGGGATTGCTTCTGAGAATAAAAAGACTTCTAATTTGCAGTTTGAGTATCTGTGCAACTATCTTGCCGAATTAAGCTTGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTATTGTGGCTGCATCGGTTATATTTCTTGTCAGATTTATTATCCGGCCTAGAGTACAGCCTTGGACTTCATACTTGTGTGAATGCCTGGGTTACAAATATGCTGAGTTGAAAGAATGCGTTCTCATTTTACACGACTTGTATTTGTCACGAAGGGCAGCATCTTTTAAAGCTGTTCGCGACAAATACAAGCAGAAGAAGTTCAAATACGTGGCAAACTTGCCTTCCCCTCCAGAGATACCACATAATTACTTTGAAGAAGAGTGA 1062 0.4021 METRASKKRSNTAQQPPSVIVLKRQRVVLGEIPDLSFPQFQPKQKLQVRRNPNLNNSATDLPSIDSNLDLDKPIYNKTNAKQNTDPYVSDIFNYLRTMEKKRRPMVGYMENVQTGITSNMRGTLVDWLVEVADEYKLLPETLHLSISYIDRFLSIQPVKRSNFQLLGVTSMLIASKYEEITPPKAVDFCEITDNSYDLEEVIKMEADILKSLNFEMGNPNVTTFLKRFVGIASENKKTSNLQFEYLCNYLAELSLLDYECIRFLPSIVAASVIFLVRFIIRPRVQPWTSYLCECLGYKYAELKECVLILHDLYLSRRAASFKAVRDKYKQKKFKYVANLPSPPEIPHNYFEEE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0044 353 Pfam Cyclin, N-terminal domain 90 216 IPR006671 -
Tpr3g0044 353 CDD CYCLIN 120 209 IPR013763 -
Tpr3g0044 353 ProSitePatterns Cyclins signature. 121 152 IPR006671 -
Tpr3g0044 353 Gene3D - 104 217 - -
Tpr3g0044 353 SUPERFAMILY Cyclin-like 219 344 IPR036915 -
Tpr3g0044 353 SMART cyclin_7 223 311 IPR013763 -
Tpr3g0044 353 SMART cyclin_7 126 210 IPR013763 -
Tpr3g0044 353 CDD CYCLIN 219 310 IPR013763 -
Tpr3g0044 353 PANTHER CYCLIN-A3-1-RELATED 19 352 - -
Tpr3g0044 353 Pfam Cyclin, C-terminal domain 219 341 IPR004367 -
Tpr3g0044 353 SMART Cyclin_C_2 219 342 IPR004367 -
Tpr3g0044 353 Gene3D - 90 338 - -
Tpr3g0044 353 PANTHER CYCLINS 19 352 IPR039361 -
Tpr3g0044 353 SUPERFAMILY Cyclin-like 82 216 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0044 Tpr-Chr3 459424 462340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0044 3 352 Core Cell Cycle Gene Families AT5G43080 51.143 2.74e-126 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0044 K06627 - gmx:100787417 423.32