Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0043 ATGGAGACTCGCGCATCAAAGAAGAGAGCAATCACCAATCAACAACCACCACAACCACAAGTCATTGTTCTCAAAAGACACAGAGTTGTATTAGGCGAAATTCCTGATCTCAGTTTCCCTCAATATCAACCCAAACACAAATTCCAAGTTCTGAGAAACCCTAACCTCAACAATTCAACAACAACAATAACAACCTTATCTCCCCTTCATTCCAATTTGGATAAGCCACTTCCAAGAAACAACAATCCCAAACGTTCCAATGAAGAGATTGATGAGCCTTATGTATCCGACATTGTCGATTATCTTCGCACAATGGAGATGCAGAAAAAAAGAAGACCAATGGTTGGTTATATGGAGAATGTTCAAACAGACATTACTTCAAACATGAGGGGGACATTGGTTGATTGGTTAACTGAGGTTGCCGACGAATACAAACTTCTTCCTGAAACCCTTCATCTATCTATTTCCTACGTCGATCGGTTCCTATCTATTCAACCTGTCAAAAGATCCAAATTTCAGCTTCTTGGTGTTTCCTCCATGCTCATTGCATCAAAGTATGAAGAAATCACCCCACCAAATGCTGTGGAATTCTGCAAAATTACTGATAACACCTATGATCTAAAGGAGGTTTTAAAGATGGAGTCTGACATTCTCAATGCTCTAAAGTTTGAAATGGGCAACCCTAATGTTATCACATTTCTAAAGTGGTTTGTCGGGATTGCTTCTGAGAATCAAAAGACTTCTAATCTACAGTTTGAGTATCTGTGCAACTATCTTGCCGAGTTAAGCATGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTCTTGTGGCTGCATCTGTTATATTTCTTGCCAGATTTATTATCCAGCCTGGAGTAAATCCATGGACTTCATCCCTGTGTGAATGCTTGGGATATGAATCAGCTGATTTGGAAGAATGTGTTACCATGTTACACGACTTGTATTTGTCGAGAAGGGCAGCATCATTCAAAGCTGTTCGTGACAAATACAAGCAGAACAAGTTCAAATGTGTGGCAAACTTGCCTTCCCCTCCTGAGGTGCCAAGCCATTACTACTTAATCTATTGCTGA 1092 0.4002 METRASKKRAITNQQPPQPQVIVLKRHRVVLGEIPDLSFPQYQPKHKFQVLRNPNLNNSTTTITTLSPLHSNLDKPLPRNNNPKRSNEEIDEPYVSDIVDYLRTMEMQKKRRPMVGYMENVQTDITSNMRGTLVDWLTEVADEYKLLPETLHLSISYVDRFLSIQPVKRSKFQLLGVSSMLIASKYEEITPPNAVEFCKITDNTYDLKEVLKMESDILNALKFEMGNPNVITFLKWFVGIASENQKTSNLQFEYLCNYLAELSMLDYECIRFLPSLVAASVIFLARFIIQPGVNPWTSSLCECLGYESADLEECVTMLHDLYLSRRAASFKAVRDKYKQNKFKCVANLPSPPEVPSHYYLIYC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0043 363 Pfam Cyclin, C-terminal domain 228 350 IPR004367 -
Tpr3g0043 363 MobiDBLite consensus disorder prediction 67 90 - -
Tpr3g0043 363 SUPERFAMILY Cyclin-like 91 225 IPR036915 -
Tpr3g0043 363 Gene3D - 111 226 - -
Tpr3g0043 363 Pfam Cyclin, N-terminal domain 97 225 IPR006671 -
Tpr3g0043 363 SMART Cyclin_C_2 228 351 IPR004367 -
Tpr3g0043 363 ProSitePatterns Cyclins signature. 130 161 IPR006671 -
Tpr3g0043 363 PANTHER CYCLIN-A3-1-RELATED 20 359 - -
Tpr3g0043 363 CDD CYCLIN 129 218 IPR013763 -
Tpr3g0043 363 Gene3D - 97 347 - -
Tpr3g0043 363 CDD CYCLIN 253 319 IPR013763 -
Tpr3g0043 363 SUPERFAMILY Cyclin-like 228 352 IPR036915 -
Tpr3g0043 363 SMART cyclin_7 235 320 IPR013763 -
Tpr3g0043 363 SMART cyclin_7 135 219 IPR013763 -
Tpr3g0043 363 PANTHER CYCLINS 20 359 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0043 Tpr-Chr3 454793 456916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0043 3 355 Core Cell Cycle Gene Families AT5G43080 50.708 5.81e-123 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0043 K06627 - gmx:547779 412.535