Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0042 ATGGAGACTAGTGCCTCAAAGAAAAGAGCAAACACCGCTCAACAACCACCATCTGTCATTGTTCTCAAAAGGCAGAGGGTTGTTTTGGGTGAAATTCCCGATCTCAGTTTCCCCCAATTTCAACCCAAACAGAAACTCCAAGTGAGGAGAAACCCTAATCTACCTTCAATTGATTCCAATTTGGATAAGCCAGTTTCAAGAAACAACAATCCGATACGTTCCAATGAACAGATTGATGAGCCTTATGTATCCGACATTGTCGATTATCTTTGCACAATGGAGATGCAGAAAAAGAGAAGGCCAATGGTTGGTTATATGGAGAATGTTCAAACAGACATTACTTCAAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTGCTGACGAATACAAGCTTCTCCCCGAAACCCTTCATCTCTCGGTTTCGTACATTGATAGGTTCCTATCTCTTAACAGTGTCAACAGATCCAAACTTCAGTTGCTTGGTGTTTCTTCCATGCTCATTGCATCAAAGTATGAAGAAATCACCCCACCAGAGGCTGTAGATTTCTGCAAAATTACTGATAACACCTATGACCTGGCAGAGGTTTTAAAGATGGAAGCCGACATACTCAAGTCTCTAAATTTTGAAATGGGCAGCCCTAATGTTAGCACATTTCTGAAGAGGTTTGTAGGGATTGCTTCTGAGAATCCAAAGACTTCTAATTTGCAGTTTGAATATCTGTGCAACTATCTCGCTGATTTAAGCTTGTTGGACTATGAGTGTATAAAATTCTTGCCTTCTGTTGTGGCTGCATCCGTTATATTTCTTGCTAGATTTATCAACCAACCTGGAGTACATCCTTGGACTTCATTGCTGTGTGAATGCTCGGGATATGAATCAGCTGATTTGGAAGAATGTGTTACAATGTTACATGACTTGTATTTGTCAAGAAGGGAAGCATCCTTAAAAGCTGTTAGGGAGAAATACAAGCAGCAGAAGTTCGAATATGTGGCAAACCTACCTTCTCCGCCAGAGGTGCCAAGTAATTACTTTGAAGAGTGA 1050 0.4095 METSASKKRANTAQQPPSVIVLKRQRVVLGEIPDLSFPQFQPKQKLQVRRNPNLPSIDSNLDKPVSRNNNPIRSNEQIDEPYVSDIVDYLCTMEMQKKRRPMVGYMENVQTDITSNMRGTLVDWLVEVADEYKLLPETLHLSVSYIDRFLSLNSVNRSKLQLLGVSSMLIASKYEEITPPEAVDFCKITDNTYDLAEVLKMEADILKSLNFEMGSPNVSTFLKRFVGIASENPKTSNLQFEYLCNYLADLSLLDYECIKFLPSVVAASVIFLARFINQPGVHPWTSLLCECSGYESADLEECVTMLHDLYLSRREASLKAVREKYKQQKFEYVANLPSPPEVPSNYFEE* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0042 349 PANTHER CYCLINS 19 348 IPR039361 -
Tpr3g0042 349 SMART cyclin_7 123 207 IPR013763 -
Tpr3g0042 349 SMART cyclin_7 220 308 IPR013763 -
Tpr3g0042 349 SUPERFAMILY Cyclin-like 216 340 IPR036915 -
Tpr3g0042 349 CDD CYCLIN 117 206 IPR013763 -
Tpr3g0042 349 ProSitePatterns Cyclins signature. 118 149 IPR006671 -
Tpr3g0042 349 Pfam Cyclin, N-terminal domain 85 213 IPR006671 -
Tpr3g0042 349 Gene3D - 85 335 - -
Tpr3g0042 349 MobiDBLite consensus disorder prediction 42 75 - -
Tpr3g0042 349 CDD CYCLIN 216 307 IPR013763 -
Tpr3g0042 349 SUPERFAMILY Cyclin-like 75 213 IPR036915 -
Tpr3g0042 349 PANTHER CYCLIN-A3-1-RELATED 19 348 - -
Tpr3g0042 349 Pfam Cyclin, C-terminal domain 216 338 IPR004367 -
Tpr3g0042 349 SMART Cyclin_C_2 216 339 IPR004367 -
Tpr3g0042 349 Gene3D - 99 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0042 Tpr-Chr3 441974 444909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0042 3 349 Core Cell Cycle Gene Families AT5G43080 52.422 8.13e-127 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0042 K06627 - gmx:100786875 431.409