Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0019 ATGGAAGAAGTAAGAGATTGTTGTTCAACAATAATAAGAAACAGAGGAAGCAAAAACAACAACCCTCAAGAAAAACACCACAAACAAAAACAAGAGAAACCATACAGAGGAATAAGAAAAAGAAAGTGGGGTAAGTGGGTAGCAGAAATAAGAGAACCAAACAAAAGATCAAGAATTTGGTTAGGTTCATACACAACTCCGGTAGCCGCGGCTCGAGCTTACGACACCGCGGTATTTTATCTAAGAGGTCCTACGGCGCGTCTTAATTTCCCCGAATTATTGTTTCAAGACGATGACGAACACAACAACGACGACGGTTCTATTCAACAAGGTAATATGTCTGCTGATTTGATACGTAAAAAAGCTACTAAAGTCGGTGCTAGAGTTGATGCTCTTCAAACAGCTCTTCAAGCTTCATCTATTTCTACTTCAGCTCAATTTAACTCTGATGTTAAACCAGATTTAAATGAGTTTCCAGAACCTGAAGATTATTAA 495 0.3838 MEEVRDCCSTIIRNRGSKNNNPQEKHHKQKQEKPYRGIRKRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELLFQDDDEHNNDDGSIQQGNMSADLIRKKATKVGARVDALQTALQASSISTSAQFNSDVKPDLNEFPEPEDY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0019 164 MobiDBLite consensus disorder prediction 13 36 - -
Tpr3g0019 164 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Tpr3g0019 164 MobiDBLite consensus disorder prediction 142 164 - -
Tpr3g0019 164 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Tpr3g0019 164 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Tpr3g0019 164 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Tpr3g0019 164 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Tpr3g0019 164 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Tpr3g0019 164 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Tpr3g0019 164 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Tpr3g0019 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 18 163 - -
Tpr3g0019 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 18 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0019 Tpr-Chr3 183511 184417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0019 33 150 AP2-EREBP Transcription Factor Family AT1G46768 66.949 1.19e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g0019 AP2 9.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0019 K09286 - gmx:100801528 215.312