Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0018 ATGGCGCAAGTTCACGAGAATCCCAACAATGACGCGACTGCTCCTGTTCCCAATCATTTGACAACAACGTCGTTATACGTCGGAGATCTTGATCACGATGTTAACGATTCGCAGCTTTACGATCTATTCAATCAGGTCGGTCAAGTTGTTTCTGTTCGGATCTGTAGGGATTTGGCATCTCAACAATCTCTAGGTTACGGTTATGTCAATTTCAGTAACCCTCATGATGCTGCAAAGGCAATGGATGTGCTGAATTTCACTCCACTGAACAACAAACCCATTCGGATTATGTATTCTCATCGCGACCCTAGTGTTCGTAAGAGTGGTGCTGCTAATATTTTCATCAAGAATTTGGATAGGGCAATTGATCACAAAGCTTTATATGATACCTTTTCGGCTTTTGGAAATATTCTTTCTTGCAAGATAGCAATGGATGCTTCTGGGTTGTCTAAAGGCTATGGTTTTGTGCAATTTGAGCATGAAGAATCTGCACAAAGTGCAATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCCGGTCTATGTTGGTCATTTCCAACGGAAGCAGGATAGAGATAATGCATTGAGTACCGCGAAGTTTAATAATGTCTATGTGAAAAACCTATCGGAAGGAGTTACGGATGATGACTTGAAGAACGTTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGATGAAAAGGAGTGGTATGTTGGAAAAGCCCTAAAAAAATATGAAAGGGAGCTTGAACTGAAAGAAAAACATGAGCAGACTATGAAGGAAACTGTTGACAAGTTTTATGGTGCTAACTTGTATCTCAAAAACTTGGATGATAGTGTCAGTGATGAAAAACTTAGTGAACTGTTTTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCAACAGGGAATTAGTAGGGGATCTGGATTTGTTGCTTTTTCAACTCCCGATGAAGCAACTCGAGCTCTTGCTGCGATGAATGGAAAAATGGTTGCTGGCAAACCTCTCTATGTTGCTCCCGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGCACAATTTTCACAAGTGAGGCCGGTTGCATTGGCTCCTATTGCGCCTAGAATGCCATTTTACCCTCCGGGTGTTCCAGGAATGGGACAACAAATTATGTATGGTCAAGCTCCTCCAGCCTTCATATCTCAGGCTGGATATGGTTACCCGCAGCAATTAGTTCCTGGAATGAGACCTGGTGGTGCTCCAATGCCAAACTTCTTTGTGCCCATGGTTCAGCAGGGTCAACAAGGTCAGCGTCCGGGCGGACGGCGAGGAGCAGGTCCTATGCAACAACTCCCACAGTCAATGCCAATGATGCAACAACAGATGCTTCCAAGGGGACGTGTGTATCGCTATCCTCCTGGTCGAAACCTGCAAGGTATTCCGCTGCCAGGAGTAGCTGGAGGAACGCCCATGCAGGCTCTGGCTACAGCCCTTGCAAATGCTCCACCTGAACAACAGAGGACTATGCTTGGTGAAGTTTTATATCCGCTAGTAGAGAAGATTGAGCATGGTGGAGCTGCAAAGGTTACAGGGATGCTTTTGGAGATGGACCAGCCTGAGGTGTTACATCTGATTGAGTCACCAGAGGCTCTCAAGACAAAAGTTGCCGAGGCCATGGATGTGTTGAGAAATGTTACCCCAACTGATCAACTGGCATCTCTCTCTCTTAATGACAATCTCGAGTCTTAG 1848 0.4399 MAQVHENPNNDATAPVPNHLTTTSLYVGDLDHDVNDSQLYDLFNQVGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSAFGNILSCKIAMDASGLSKGYGFVQFEHEESAQSAIDKLNGMLINDKPVYVGHFQRKQDRDNALSTAKFNNVYVKNLSEGVTDDDLKNVFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDEKEWYVGKALKKYERELELKEKHEQTMKETVDKFYGANLYLKNLDDSVSDEKLSELFSEFGTVTSCKILRDQQGISRGSGFVAFSTPDEATRALAAMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVALAPIAPRMPFYPPGVPGMGQQIMYGQAPPAFISQAGYGYPQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRGAGPMQQLPQSMPMMQQQMLPRGRVYRYPPGRNLQGIPLPGVAGGTPMQALATALANAPPEQQRTMLGEVLYPLVEKIEHGGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAMDVLRNVTPTDQLASLSLNDNLES* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0018 615 SUPERFAMILY RNA-binding domain, RBD 202 386 IPR035979 GO:0003676
Tpr3g0018 615 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Tpr3g0018 615 CDD RRM4_I_PABPs 304 382 - -
Tpr3g0018 615 CDD RRM2_I_PABPs 109 185 IPR045305 -
Tpr3g0018 615 Gene3D - 105 191 IPR012677 -
Tpr3g0018 615 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 24 596 IPR006515 GO:0003723
Tpr3g0018 615 SMART rrm1_1 203 275 IPR000504 GO:0003723
Tpr3g0018 615 SMART rrm1_1 24 97 IPR000504 GO:0003723
Tpr3g0018 615 SMART rrm1_1 306 378 IPR000504 GO:0003723
Tpr3g0018 615 SMART rrm1_1 112 184 IPR000504 GO:0003723
Tpr3g0018 615 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 523 600 IPR002004 GO:0003723
Tpr3g0018 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Tpr3g0018 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Tpr3g0018 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Tpr3g0018 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Tpr3g0018 615 SMART poly_2 535 598 IPR002004 GO:0003723
Tpr3g0018 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Tpr3g0018 615 SUPERFAMILY PABC (PABP) domain 486 600 IPR036053 GO:0003723
Tpr3g0018 615 Coils Coil 278 298 - -
Tpr3g0018 615 Gene3D - 192 286 IPR012677 -
Tpr3g0018 615 Gene3D - 287 394 IPR012677 -
Tpr3g0018 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Tpr3g0018 615 PANTHER RNA BINDING PROTEIN 526 604 - -
Tpr3g0018 615 PANTHER RNA BINDING PROTEIN 13 522 - -
Tpr3g0018 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Tpr3g0018 615 SMART rrm2_1 203 275 IPR003954 GO:0003676
Tpr3g0018 615 SMART rrm2_1 24 97 IPR003954 GO:0003676
Tpr3g0018 615 SMART rrm2_1 112 184 IPR003954 GO:0003676
Tpr3g0018 615 SMART rrm2_1 306 378 IPR003954 GO:0003676
Tpr3g0018 615 CDD RRM1_I_PABPs 24 103 - -
Tpr3g0018 615 Pfam Poly-adenylate binding protein, unique domain 531 595 IPR002004 GO:0003723
Tpr3g0018 615 Gene3D - 2 104 IPR012677 -
Tpr3g0018 615 Gene3D - 520 599 - -
Tpr3g0018 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Tpr3g0018 615 CDD RRM3_I_PABPs 201 280 - -
Tpr3g0018 615 PANTHER POLYADENYLATE-BINDING PROTEIN 526 604 - -
Tpr3g0018 615 PANTHER POLYADENYLATE-BINDING PROTEIN 13 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0018 Tpr-Chr3 172007 178231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0018 23 610 Eukaryotic Initiation Factors Gene Family AT4G34110 68.121 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0018 K13126 - gmx:100784442 908.672