Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0013 ATGACTTCCTCTATCGCTCAAAGAGTTTCAGAATGTTTTATTAGACCCATACATCCTATTGAAAATTCAAACCAAATTTGTTATTTAACAGGTTGGGATATTGCTATGTCATCTATGCACTATATCCAAAAAGGCCTATTATTCAAAAAGCCTAAAACATCACCATACAACCAACAAGATTTCATTGAGAATTTGTTGAAGAATCTCAAAAACTCTCTCTCCCATGCTCTTTTCTATTTCTATCCTCTTTGTGGCCATCTTGTCACCCACAAAACTCAAGACCCTCACTCTTATACTATTTTTGTTGATTGTAGTAACAATAACCCCGGAGCTAGATTCATCTATGCAACCGCGGAAGTGATCATTTCTGATATCCTTACACCGGTTGATGTTCCTCCCATTGTTGAAACATTTTTTGATCTCAACAAAGCAACCAACCATGACGGTCACACCATTCCGTTGTTATCAATTCAAGTCACGGAGCTCATTGATGGTGTTTTTATAGGTTGTTCCGTGAATCATTGTATTGGTGACGGTACTTCTTTTTGGAATTTTTTTAATATATGGTCCGAGATATTTCAATCTCAAGATTATGAAAATGAAAACAATATTGTTCTCATTTCGCGTCAACCATTTCACAATCGTTGGTTTCCAGAAGGCTACGGTCCACCAACAAACCTTCCCTTCAAACATCACGAAGAGTTCATTAGCAAATATCAATCTCCGGTCTTCAGAGATAGATTTTTCCATTTTACAAAAGAGTATATCGCAAAACTAAAATCAAAGGCGAATAAAGAGTTCAACACAACAAAAATATCTTCGTTCCAAGCCTTATCAGCACATGTTTGGCGATGTGTGACACGCGCACGCCAACTAACAAACAATCAAAAAACAAGTTGTAAGTTAGCGATAAATAATCGATCAAGAATGGAACCTCCTTTGCCAAAAGAGTATTTTGGAAATGCAGTTGATGTGATTAGTATTGAAACAACTGTTGAGGAGTTGCTTCAAAACAATCTAGGATGGGCAGCATCGAAGGTTAATGAAGTTGTGGCGAATCATGACGACAAAGAAGTGAGAAAAATGTTAAAGGAATGGTTAGAGTCTCCTATTGTATACCAACTTGGTTGTCACTTTGATCCTAACAGTATCACAGTGTCAAGTTCACCAAGGTTCAATATGTATGGAAATGAATTTGGAATGGGGAAAGCTATAGCCGTTCTTAGTGGTTATGCTAATAAATTTGATGGTAATGTGTCATCATATGAAGGGTATGAAGAAGGAAGCATAGATTTGGCATTGACTCTTATGCCTGATGCAATGAGGGCGTTGGAATCAGATGAGGAATTCATGAATGTAGTTTGA 1365 0.3707 MTSSIAQRVSECFIRPIHPIENSNQICYLTGWDIAMSSMHYIQKGLLFKKPKTSPYNQQDFIENLLKNLKNSLSHALFYFYPLCGHLVTHKTQDPHSYTIFVDCSNNNPGARFIYATAEVIISDILTPVDVPPIVETFFDLNKATNHDGHTIPLLSIQVTELIDGVFIGCSVNHCIGDGTSFWNFFNIWSEIFQSQDYENENNIVLISRQPFHNRWFPEGYGPPTNLPFKHHEEFISKYQSPVFRDRFFHFTKEYIAKLKSKANKEFNTTKISSFQALSAHVWRCVTRARQLTNNQKTSCKLAINNRSRMEPPLPKEYFGNAVDVISIETTVEELLQNNLGWAASKVNEVVANHDDKEVRKMLKEWLESPIVYQLGCHFDPNSITVSSSPRFNMYGNEFGMGKAIAVLSGYANKFDGNVSSYEGYEEGSIDLALTLMPDAMRALESDEEFMNVV* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0013 454 Gene3D - 3 224 IPR023213 -
Tpr3g0013 454 Gene3D - 231 446 IPR023213 -
Tpr3g0013 454 Pfam Transferase family 16 451 - -
Tpr3g0013 454 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 453 - -
Tpr3g0013 454 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0013 Tpr-Chr3 136658 138184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0013 69 445 Monolignol Biosynthesis Gene Families AT5G48930 28.180 8.22e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0013 - - lja:Lj1g3v1664450.1 650.973