Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0012 ATGCATCAAAATCATATTGGGATAATGAGTTCCTCTGCAGTTGAACAAGTTTCAGAATGTTTTATCAAACCACTTTTCCCCATTCAAGAATCAAAACAAATATGCTATTTAACAACTTGGGATATTGCAATGTTATCTATGCACTACATCCAAAAAGGCTTGTTATTCAAAAAGCCACCACCTCCAAATAATCAAAAAGATTTCATTCATAATCTTTTGGAGAATATCAAACAATCTATTTCTCTAGCTCTCTTCCATTTCTATCCACTATCCGGTCGCCTTGTCACCCAAAAAACTCAAGAGCCTCCAACTTATTCGGTTTTCGTTGATTGTAGTAACGATAACCCGGGAGCTAGATTCATCTATGCAACTTTGGATGCAACTATATATGATATCCTATCACCGGTTGATCATCCACCAGTCGTGGACTCATTGTTTGATCTTAATCGAGCAATTAATCACGATGGTCACACCATGCCATTATTATCTATACAAGTCACTGAGCTAGTGGATGGTGTTTTCATAGGTTGTTCTATGAATCATTGTATTGGTGATGGAACTTGTTTTTGGAATTTCTTTAATGTATGGTCGGAAATCTTTCAAGCTCGAGAGAATGGTCGTGATTTTGTCGTGTCACACCAACCATTTCACAATCGTTGGTTCCTAGAAGGTTACGGTCCACTAATTAATCTTCCGTTCAAACATCATGACGAGTTTACAAGTAGATTTGAAGCGCCGAAGTTGAGAGAGAGATTCTTCCACTTTAGTGCGGAGTCTATTGCAAAACTGAAAGCCAAGGCCAATGAGGAAGCTAATACAAATGAAATCTCTTCATTCCAATCATTATCGGCTTTTCTATGGAGATATGTGACGCGTGCACGCGGACTAGCACATGATCAAAAAGTTAGTTGTAAGTTTGCCATAAACAATAGACCAAGAATCAAGCCACCTCTCCCGCAAGAGTACTTTGGAAACTCGGTTGATGTGGTGAGTACTGAAACGACTGTAGGGGAATTGCTTGAGAATGATTTGGGATGGGCGGCGTCGATGGTGCATACACTTGTTGTGAATCATGATGACAGAGAGGTCAGAGAGATGATCAAAAATTGGTTAGAGTCTCCTATTGTCTATCAACTTGGTCGCCACTTTGATCCTTTCAGCGTCGTCATGTCAAGTTCACCGAGATTCAATATGTATGGGAATGAATTTGGAATGGGAAAACCGGTCGCAGTTCTAAGTGGCTATGCAAACAAATTTAATGGGAATGTGACAGCTTACGAGGGATATGAAGGAGGGGGAAGCATGGTTTTAGCAGTGTCTCTTTTGCCTGATGCAATACGTGCACTAGAATTAGACGACGATTTTATGAATGTAGTTTCCGTCGCCAATTTCGCTAATATGCCATGA 1407 0.4001 MHQNHIGIMSSSAVEQVSECFIKPLFPIQESKQICYLTTWDIAMLSMHYIQKGLLFKKPPPPNNQKDFIHNLLENIKQSISLALFHFYPLSGRLVTQKTQEPPTYSVFVDCSNDNPGARFIYATLDATIYDILSPVDHPPVVDSLFDLNRAINHDGHTMPLLSIQVTELVDGVFIGCSMNHCIGDGTCFWNFFNVWSEIFQARENGRDFVVSHQPFHNRWFLEGYGPLINLPFKHHDEFTSRFEAPKLRERFFHFSAESIAKLKAKANEEANTNEISSFQSLSAFLWRYVTRARGLAHDQKVSCKFAINNRPRIKPPLPQEYFGNSVDVVSTETTVGELLENDLGWAASMVHTLVVNHDDREVREMIKNWLESPIVYQLGRHFDPFSVVMSSSPRFNMYGNEFGMGKPVAVLSGYANKFNGNVTAYEGYEGGGSMVLAVSLLPDAIRALELDDDFMNVVSVANFANMP* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0012 468 Gene3D - 9 228 IPR023213 -
Tpr3g0012 468 Pfam Transferase family 14 452 - -
Tpr3g0012 468 Gene3D - 234 451 IPR023213 -
Tpr3g0012 468 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 459 - -
Tpr3g0012 468 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 8 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0012 Tpr-Chr3 132192 133806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0012 76 450 Monolignol Biosynthesis Gene Families AT5G48930 27.595 2.30e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0012 - - lja:Lj1g3v1664450.1 663.299