Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0010 ATGGACTCTAACCAGTTAAAACCATCCTCCTCATCATCAGAAGATCAGATTGACATGATGTTGATGATGATGATGCAACTACCTGAACTTTCTTCATCTAACGGTAATAACAACATCAATCAATTTCCACCGTCAGATCAACAACTCTATGGTAATGGTTCTACTCCTAGTTCTACTAATACACGTCCTCTTGTAGATTTAATTGATAACCCTCCTAATCAAATCTCTAATTGGTCTTCAACTTCATCATTCACCACTCACTTACCCTCACAATCTCCAAACACAAACACAAACACAATCTCTTTCACTAATAACAACATGTTTCAACAACTACAACAAGCATCACCAACGTTAATGTTTTCGAATTCGAACAACGATGTTGTTGTTACGAATACGAATCATTACGTTGGTGGTGCAGCATCAGCGTCGCCATCAGAGAAACGAAACTCGATGGCGGCGATGAGGGAGATGATATTCAGAATAGCAGCTATGCAACCAATTTACATTGATCCAGAATCAGTTAAACCACCAAAGAGAAGAAACGTGAAGATATCAAAAGATCCTCAGAGTATAGCAGCTAGACATAGAAGAGAAAGAATAAGCGAGAAAATAAGGATATTACAGAGAATGGTACCAGGTGGAACTAAAATGGATACTGCATCAATGTTAGATGAAGCTGTTCATTATGTTAAGTTTCTTAAGACACAACTTAAGTCACTTCAGGAACGTGCTTCTGTAGCCAACAGTAACAGAACAGTTGCAGGTTCTGGAATAGGGTTCCCTGTTTCATTGCCTAAGCCTTATCAAGGTCGTAATGTTGATCATTATGCATGA 834 0.3849 MDSNQLKPSSSSSEDQIDMMLMMMMQLPELSSSNGNNNINQFPPSDQQLYGNGSTPSSTNTRPLVDLIDNPPNQISNWSSTSSFTTHLPSQSPNTNTNTISFTNNNMFQQLQQASPTLMFSNSNNDVVVTNTNHYVGGAASASPSEKRNSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAVHYVKFLKTQLKSLQERASVANSNRTVAGSGIGFPVSLPKPYQGRNVDHYA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0010 277 CDD bHLH_AtIND_like 185 243 - -
Tpr3g0010 277 Coils Coil 223 250 - -
Tpr3g0010 277 SMART finulus 190 239 IPR011598 GO:0046983
Tpr3g0010 277 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 253 IPR045843 GO:0003700|GO:0006355
Tpr3g0010 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Tpr3g0010 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 245 IPR036638 GO:0046983
Tpr3g0010 277 Pfam Helix-loop-helix DNA-binding domain 191 233 IPR011598 GO:0046983
Tpr3g0010 277 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 253 - -
Tpr3g0010 277 Gene3D - 183 253 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0010 Tpr-Chr3 77664 78832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0010 141 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.358 2.93e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g0010 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0010 - - gmx:100815041 254.988