Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6160 ATGGATATGGATACACCAGAGAGGAACCAGATCAACACTACTCTCTCTAAATTCGAGGATTCACCGGTATTCAACTATATCAACAATTTGTCTCCTATAAAGCCAGTTAAATCTGCTCACATTACTCAAACTTTCAATTCACTTACCTTTTCATCTCCTCCATCTGTTTTCACATCACCACACGCCGCTTCTTTCAAGGAGTCGAGATTCCTACGCCGACATAGCCTACCGGGCGTATCAAAGCCTAAGGATTCGTCTGAAGATGTAAATAAAGTGTACTCAAATGAAGGGGCTCTTGCAGATTCAACTCTTTCACAGCATAACTCATGTGAATTACATGACAGTGCTGGTCAAGGGATTTCGGTAGGAGATGCTACTATTGAGCTATCGAACGAACAGGCAAAGTTCTCAGATGAGCTACCACAGGCATTACAGTATAATTGTGGTAGTCCTGGTTATGATCCTCGGCTATGTGGTGATGCGGCTAACTCTCTTTTGGAATTGTCTGGTGAAGCTGTATCAGATGTTGCTTATGTTCGGGATAGTGGTAAAACAGATTCGGTTGAGGCTGAATTGCATCTTCAAGGAACAAGTCAGATCGATCCAAAGGGTGAAGGCTCTGACTGTGATTGGGATGGTTTAATTCACAATGCTTCTGCTGATGTGTTAATTGATGCGGAAGCTTTCAAGGGCTTAGCGTTTAAGGGTCTAATGCATGGCTCTTCTATACGGCTTAGCGATTTTGTTCCCTTGTTACAACAATCTACCAGCAATAATGATCAGAAAGCACACTTGGTGGACTCAGTTGCTTCTGGTTCTGAACATGAAATTCACAATCATTGTTCTGAGCTAGTTGCTGTGACGGACACTTGCCCTTCACAGGACAATCTTGCTAATGGCTCTTTGATGACTAGCGATCCAAATGAGAAAATGGATAATGAGCTTGTTTCTGTGACGCACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCCAGTGTGCGAAAGAAGATCTCAGATGATAATTCAAACACCGGCTCTAGTACAACACAGTCTGAAGTAAGAAATGCTGCTAATGAAAAACAACTGCTCCCTGCAAAGCGCAATGCAAATTCACAAAGGTCCATTTTGCGGGGTATCGGTTTACACCTGAATGCACTTGCTACCGTAAAGGATCACAAAGGCAAGCAAAATGAAAATGTGACTTCTGGAGACCAACTCGGTCTGGCCAGCTCTACTTCCTTGTTACTCTCTGCGTGCCAAGAAAATCAACGTCTATCGATTTTATCTGTATCGGTATCCTCTGAAAGAGAAACGGACCCATCAGACAATGGGGTTCAGCCCCCTGAAGATTGTCCCCAGGCACTAGCTTACATGGCTGCTGATGATTTCAACCAGAATAGCCCCAAAAAGAAAAGGCGTAAGTCAGAGCCAGTTGGCGAAACTGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCCTGAAGCTTTATTGTGAGTGTTTTGCTGCTGGTGTTTACTGCATAGAACCCTGCTCCTGTCAGGAATGCTTCAACAAGCCTATTCATGAAGATACTGTTCTTCAAACTCGCAAACAGATTGAATCCCGCAACCCTCTTGCATTTGCTCCTAAAGTCATACGAAGTGCAGACTCTGTGCCTGAAATTGACCCAAACAAAACTCCAGCTTCAGCACGCCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTAACTGCAGATGTGAAGGGTGCAAGAACGCATTCGGTAGAAAGGATGGATCTGCTTCAATAGGGATAGAAGGTGAGACAGAAGAAGAAACAGAAACAAGTGACAAGGGTCTGGACGAAAAGGCTATTCAGAAAACTGAAATTCAAAATATTGAAGATCATCCAGAGTCTTCTTTGGTCTCAACACCGTTACAGCTTTCCAGGCCATTGCTTCCGATGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCACTGGTTCTGGATATTTTGCCAGCCAAAAGCATGCGATGCCAAATTCTCTATGGTCTCAATCTAAGCCTTTTCAGACTATTCCAGACGATGAAATGCCAGAGATTCTCCGTGGTGATAGCTCTCCTATTGCATGCATCAAAACATCATCTCCAAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAATGGGATCATCTCCTGCTCGCAGAGGCGGAAGGAAGTTGATATTACAATCTATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2325 0.4387 MDMDTPERNQINTTLSKFEDSPVFNYINNLSPIKPVKSAHITQTFNSLTFSSPPSVFTSPHAASFKESRFLRRHSLPGVSKPKDSSEDVNKVYSNEGALADSTLSQHNSCELHDSAGQGISVGDATIELSNEQAKFSDELPQALQYNCGSPGYDPRLCGDAANSLLELSGEAVSDVAYVRDSGKTDSVEAELHLQGTSQIDPKGEGSDCDWDGLIHNASADVLIDAEAFKGLAFKGLMHGSSIRLSDFVPLLQQSTSNNDQKAHLVDSVASGSEHEIHNHCSELVAVTDTCPSQDNLANGSLMTSDPNEKMDNELVSVTHRGIRRRCLDFEMASVRKKISDDNSNTGSSTTQSEVRNAANEKQLLPAKRNANSQRSILRGIGLHLNALATVKDHKGKQNENVTSGDQLGLASSTSLLLSACQENQRLSILSVSVSSERETDPSDNGVQPPEDCPQALAYMAADDFNQNSPKKKRRKSEPVGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSASIGIEGETEEETETSDKGLDEKAIQKTEIQNIEDHPESSLVSTPLQLSRPLLPMPFSSKGKPPRSFVTTITGSGYFASQKHAMPNSLWSQSKPFQTIPDDEMPEILRGDSSPIACIKTSSPNGKRISSPNCEMGSSPARRGGRKLILQSIPSFPSLTPHP* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6160 774 MobiDBLite consensus disorder prediction 732 774 - -
Tpr2g6160 774 ProSiteProfiles CRC domain profile. 485 608 IPR005172 -
Tpr2g6160 774 MobiDBLite consensus disorder prediction 732 748 - -
Tpr2g6160 774 MobiDBLite consensus disorder prediction 339 371 - -
Tpr2g6160 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 773 - -
Tpr2g6160 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 773 IPR044522 GO:0003700
Tpr2g6160 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 487 522 IPR005172 -
Tpr2g6160 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 571 606 IPR005172 -
Tpr2g6160 774 SMART CXC_2 484 525 IPR033467 -
Tpr2g6160 774 SMART CXC_2 568 609 IPR033467 -
Tpr2g6160 774 MobiDBLite consensus disorder prediction 339 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6160 Tpr-Chr2 74431660 74436731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6160 3 773 CPP Transcription Factor Family AT3G22780 42.697 9.81e-152 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tpr2g6160 TCR 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6160 - - mtr:MTR_5g006530 1273.07