Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6142 ATGGATGACAAGAACAATGTGGTGAACGTTGATCCTCATGTAGAGTCACCAACTTCGGTTCTAGAAGAAGAGGATGTAGAAGTGAAATCGGAGGAACAGGTGGTTGCAGATGATGGGTCTTCTTCGCTTGTGTCGAAATTAATGGTGGAGGAGGAAAAGAAGTTACTTAAAGTTCGTGCTAAGGAAGATGAGGAACCGTGTGAGGAAGCGTCGAATCTTGATGATACACAGTTTAATAAGTTGGATGAACTGTTAACACAAACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGACGATATCACAATGAATCCGAGTGAACAAGAGAATGAGGACGAGGAAGAGAGCCAGCCGAGTGTGAAAAAGAAGGGCCGTGGAGCAAAACGAAAGGCGGCTAAACAATACAATACTAGGAAAGCTAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATCTGAAGACTGAAGATGTGAATTTGACTGAAGAAGAAAGAACTGAGAAAGAGCAGAAGGATCTGATGCCTTTACTAACTGGTGGAAAATTGAAGTCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTAGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGCTTTATTTCTCATCTAAAATCAAGAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGGTGAATGAGTTTTCTAGGTTTACACCATCGCTCCGTGTTGTTATCTACCATGGTAACAAAAATCAGAGAGATCAAATCAGAAGGAAACATATGCCTAGAACAGTTGGCCCAGAATTTCCCATAGTAATAACTTCATATGAGATTGCGATGAATGATGCTAGGAAATGTTTTGCGCCATACAGTTGGAAATATCTTGTTGTGGACGAGGGACACAGGCTCAAAAACTCAAATTGCAAATTAGTGAAGTCATTGAGATACATTAATGTTGACAATAAACTTCTTTTGACTGGGACACCTCTCCAGAATAATTTGGCAGAGCTTTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCATCACTTCATGAATTTGAGAAATGGTTTAATCTGTCAGGAAAGTGCACTAATGGAGCAACAATGGAAGAAATGGAAGAGAAAAGAAGAAATCAAGTGGTAGCCAAGCTTCATGGAATTCTTAGGCCATTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGCTAATGTTGCCGCATAAAAAAGAGATAATTATTTATGCTAACATGACTGAGCATCAGAAGAGCTTGCAAGATCATTTAATTAACGAGAAACTGGGGGAATATTTGGAAACGAAACTATCAGTTGGACGTGGTGCGACGAAGCTTAATAATTTGGTTATTCAACTTAGGAAAGTCTGTAACCATCCCGATCTCTTGGAATCAGCCTATGATGGTTCATATTTCTTTCCTCCGGTGAATGAGATAATCGAACAATGTGGAAAATTCCACTTGCTCGATAGATTGTTGCAGCGGCTATTTGCACGTAATCACAAGGTTCTGGTCTTCAGTCAATGGACTAAAGTGCTAGATATAATGGAATACTATTTTAGTGAAAAGGGTTTTGAAGTTTGCAGGATTGATGGCTCGGTGAAATTGGATGATAGGAAACGTCAGATCGAGGACTTCAACGATACAAACAGCAATTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTCACTGCAGCTGACACTTGTATTATTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCACGTTTACAGGCTTGCAACTGCACAATCAGTAGAGGGTCGAATGTTGAAAAGAGCTTTCAGCAAGTTGAAACTTGAGCATGTGGTGATAGAGAAAGGACAATTTCATCAGGAGCGTACAACACCTTCCATTGTGGATGAAATGGAGGGAGAGGATATTTTGGCATTGCTTCGAGATGAAGAAACAGCCGAGGACAAAATGATACAGAAAGATATCAGTGATGAAGACCTGGAGAAGCTTTTGGATCGCAGCGATCTTGTTATCAATAGCTCAACCGATGAGAAAGCTCCAGTTAGTACCTTTCCCCTTAAAGGGCCTGGATGGGAGGTGGTGATTTCTGCTGCGTCTGGCGGCATGCTTTCCACTCTTAACAGCTAA 2256 0.4051 MDDKNNVVNVDPHVESPTSVLEEEDVEVKSEEQVVADDGSSSLVSKLMVEEEKKLLKVRAKEDEEPCEEASNLDDTQFNKLDELLTQTKLYSEFLLEKMDDITMNPSEQENEDEEESQPSVKKKGRGAKRKAAKQYNTRKAKKAVEAMITRSKENLKTEDVNLTEEERTEKEQKDLMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKSRGLDGPYMIIAPLSTLSNWVNEFSRFTPSLRVVIYHGNKNQRDQIRRKHMPRTVGPEFPIVITSYEIAMNDARKCFAPYSWKYLVVDEGHRLKNSNCKLVKSLRYINVDNKLLLTGTPLQNNLAELWSLLNFILPDIFSSLHEFEKWFNLSGKCTNGATMEEMEEKRRNQVVAKLHGILRPFLLRRMKSDVELMLPHKKEIIIYANMTEHQKSLQDHLINEKLGEYLETKLSVGRGATKLNNLVIQLRKVCNHPDLLESAYDGSYFFPPVNEIIEQCGKFHLLDRLLQRLFARNHKVLVFSQWTKVLDIMEYYFSEKGFEVCRIDGSVKLDDRKRQIEDFNDTNSNCRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTTPSIVDEMEGEDILALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDEKAPVSTFPLKGPGWEVVISAASGGMLSTLNS* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6142 751 Pfam Helicase conserved C-terminal domain 511 621 IPR001650 -
Tpr2g6142 751 SMART helicmild6 537 621 IPR001650 -
Tpr2g6142 751 MobiDBLite consensus disorder prediction 124 138 - -
Tpr2g6142 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 667 IPR001650 -
Tpr2g6142 751 SMART ultradead3 181 373 IPR014001 -
Tpr2g6142 751 MobiDBLite consensus disorder prediction 1 41 - -
Tpr2g6142 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 707 IPR027417 -
Tpr2g6142 751 Gene3D - 186 416 IPR038718 -
Tpr2g6142 751 MobiDBLite consensus disorder prediction 59 78 - -
Tpr2g6142 751 Pfam SNF2-related domain 188 485 IPR000330 GO:0005524|GO:0140658
Tpr2g6142 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 415 IPR027417 -
Tpr2g6142 751 PANTHER BNAC07G16550D PROTEIN 11 750 - -
Tpr2g6142 751 Gene3D - 421 722 IPR027417 -
Tpr2g6142 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 365 IPR014001 -
Tpr2g6142 751 MobiDBLite consensus disorder prediction 106 140 - -
Tpr2g6142 751 PANTHER SNF2/RAD54 HELICASE FAMILY 11 750 - -
Tpr2g6142 751 CDD SF2_C_SNF 496 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6142 Tpr-Chr2 74322668 74328822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6142 171 642 RAD5 or RAD16-like Gene Family AT3G16600 23.917 6.67e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr2g6142 SNF2_N 3.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6142 K19001 - gmx:100777687 1195.65