Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6123 ATGGAGCTTCAGAAGCGTCCAGATCATCATCACAACCTCCCGGAGAAGAAAGGCCAAAAGAGGAAACTCCAACAAGAGGAAGAAGAATTTCAACAACAGATCTCTCTTCCTCCCACCGGAGAAACACGCGACGCTCTTCTCTCCGATATCAACCAACACGTTTCAATCCTTCTTTCCACTTTTTCATCTAAAGAATCCGATAGAGCTTCTGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCCAAAAACGAGGAAATTGTGAACCTGATTGTTGAAGGAGGTGCTATTCCAGCTTTGATTAAGCATCTTCAATCTCCTCCTTTGCCTCAAAACGACAGCGTTCCGAAGCTGTTGCCGTTTGAGCATGAGGTTGAGAAAGGAAGCGCTTTCGCACTTGGACTTCTTGCCGTTAAGCCAGAACATCAACAGCTCATTGTTGATAATGGTGCCGTAAAGCATCTTGTTGATCTTTTGAAGAGACATAAGAATGGGTTAACATCACGTGCCATTAATAGTCTCATTCGGAGGGCTGCGGATGCGATCACTAACCTTGCTCATGAGAATAGCAGTATTAAAACCCGTGTTAGGACGGAAGGTGGGATTCCACCATTAGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTACGGACCCTGGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTGATTTTGATGCTCCGGTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATCGGAAATCTGGTCCACTCCTCCCCCAATATAAAGAAAGAAGTTATTCTTGCTGGAGCCTTGCAACCTGTTATTGGATTACTGAGCTCCTGTTGCTCAGAAAGTCAGAGAGAAGCAGCATTGTTACTTGGACAGTTTGCAGCGACCGATTCAGACTGCAAGGTTCACATTGTACAAAGAGGTGCTGTACGGCCTTTGATAGATATGCTTCAGTCTCCCGATGTTCAGCTCAAAGAAATGTCTGCGTTTGCATTGGGAAGATTGGCACAGGACACACATAACCAAGCTGGTATTGCACACACTGGCGGCTTAATGCCATTGCTGAAGCTTCTTGACTCAAAAAACGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGCCCGACTTTATTAGAGTAGGTGGAATTAAGAGACTCCAGGATGGAGAGTTTATTATTCAAGCAACTAAGGATTGTGTTGCTAAGACATTGAAGAGACTAGAAGAGAAGATTCATGGTCGTGTGTTGAACCATTTGTTATATCTTATGCGAGTTTCAGACAAGGCATTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGACCAGAGAAAAATATTTATTGACCACAATGGGCTGGAATTGCTTATTGGACTTCTTGGTTCATCCTGCCCTAAGCAGCAACTTGACGGTGCCGTGGCTTTATGCAAGTTGGCTAACAAAGCTATGGCTCTGTCTCCTGTAGATGCTGCTCCTCCATCCCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCCGACGTTACATTTTTGGTTGAAGGTAAACGGTTTTATGCTCACAGAATCTGTTTACTTGCATCTTCCGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATTGAGATTCCAAATATTAGATGGGAGGTCTTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCTTGAAATTGCTCAAGATCTCCTCCGAGCAGCTGATCAATATCTCTTAGAAGGGCTTAAGAGACTATGTGAATACACAATTGCACAGGATGTATCAGTGGAGAGTGTGTCAAGTATGTATGAACTTTCGGAAGCATTCAATGCTATATCATTGAGACACACATGCATACTTTTTATCTTGGAGCACTTCGATAAATTAAGTGCAATGCCAGGACACTCTCATTTGATTCAGAGTACAATACCTGAGATCCGCAATTACTTTGTTAAAACTCTTACAAAGGGGAATTCCAACATCCAGGCGTAG 2130 0.4347 MELQKRPDHHHNLPEKKGQKRKLQQEEEEFQQQISLPPTGETRDALLSDINQHVSILLSTFSSKESDRASAKRATHALADLAKNEEIVNLIVEGGAIPALIKHLQSPPLPQNDSVPKLLPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAVKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRTEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIDMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHTGGLMPLLKLLDSKNGSLQHNAAFALYGLAENEDNVPDFIRVGGIKRLQDGEFIIQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSDKAFQRRVALALAHLCSADDQRKIFIDHNGLELLIGLLGSSCPKQQLDGAVALCKLANKAMALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLEIAQDLLRAADQYLLEGLKRLCEYTIAQDVSVESVSSMYELSEAFNAISLRHTCILFILEHFDKLSAMPGHSHLIQSTIPEIRNYFVKTLTKGNSNIQA* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6123 709 Pfam Armadillo/beta-catenin-like repeat 231 270 IPR000225 GO:0005515
Tpr2g6123 709 Pfam Armadillo/beta-catenin-like repeat 196 228 IPR000225 GO:0005515
Tpr2g6123 709 Pfam Armadillo/beta-catenin-like repeat 315 354 IPR000225 GO:0005515
Tpr2g6123 709 Coils Coil 13 33 - -
Tpr2g6123 709 Gene3D - 277 521 IPR011989 -
Tpr2g6123 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 235 IPR000225 GO:0005515
Tpr2g6123 709 SUPERFAMILY ARM repeat 51 414 IPR016024 -
Tpr2g6123 709 SMART arm_5 84 138 IPR000225 GO:0005515
Tpr2g6123 709 SMART arm_5 315 355 IPR000225 GO:0005515
Tpr2g6123 709 SMART arm_5 231 271 IPR000225 GO:0005515
Tpr2g6123 709 SMART arm_5 356 396 IPR000225 GO:0005515
Tpr2g6123 709 SMART arm_5 189 229 IPR000225 GO:0005515
Tpr2g6123 709 SMART arm_5 273 313 IPR000225 GO:0005515
Tpr2g6123 709 SMART arm_5 139 187 IPR000225 GO:0005515
Tpr2g6123 709 SMART arm_5 471 511 IPR000225 GO:0005515
Tpr2g6123 709 SMART BTB_4 543 640 IPR000210 GO:0005515
Tpr2g6123 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Tpr2g6123 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 95 151 IPR000225 GO:0005515
Tpr2g6123 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 705 - -
Tpr2g6123 709 MobiDBLite consensus disorder prediction 1 28 - -
Tpr2g6123 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Tpr2g6123 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 705 IPR044282 -
Tpr2g6123 709 Gene3D - 171 276 IPR011989 -
Tpr2g6123 709 CDD BTB_POZ_ARIA_plant 530 645 - -
Tpr2g6123 709 SUPERFAMILY POZ domain 535 637 IPR011333 -
Tpr2g6123 709 Gene3D - 38 170 IPR011989 -
Tpr2g6123 709 Gene3D Potassium Channel Kv1.1; Chain A 524 672 IPR011333 -
Tpr2g6123 709 Pfam BTB/POZ domain 536 638 IPR000210 GO:0005515
Tpr2g6123 709 SUPERFAMILY ARM repeat 441 613 IPR016024 -
Tpr2g6123 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 150 200 IPR000225 GO:0005515
Tpr2g6123 709 MobiDBLite consensus disorder prediction 1 39 - -
Tpr2g6123 709 ProSiteProfiles BTB domain profile. 543 610 IPR000210 GO:0005515
Tpr2g6123 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6123 Tpr-Chr2 74190659 74202646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6123 202 420 U-box Gene Family AT3G46510 28.448 7.37e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tpr2g6123 BTB 5.1e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6123 - - gmx:100812456 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6123 2 74190659 74202646 Tpr1g0578 1 4800904 4809606 PCT