Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6113 ATGTTTGGTTCTTCTTCTTCTTCATCTTCGCAACACGATCACATTATGAATAATATGTTTGAGGATGAGTTGCTAAAGGCAAATGATGAACATTACAAAATGGAATTTGGAGGTCCATCAAGACAGAGTGATGAACAACAACAACCAAACAAAGATGAACAACAACAACCCAACCAATGTCTCAAAAAAAGGAACTATCGCCGCCACACACAAGAACAAATAGAAGAACTTGATGCTTTCTTCAAGCGGAATGCTCACCCAGATGAGAGGGAAAGAAAAGAGCTGGGCCGTCGGCTTGGGTTAGAACCTTCACAAATTAAATTCTGGTTTCAGAACAGGCGCACCGGTCTAAAGGTCCGAAGTGAAAGAGAAGAGAATGAATTATTGAAGGCTGAAATCGAGAAGCTTCGAGCGGAGATGAATAGGCACAAGGAGACCCCAACTACATGCAACGTCTGTGGAATCCCAGCTACCCTTGTGATGTCTAATGAACAGCAACAATTGAGGTTGGAGAATGCTCTGTTAAGAAAAGAGCTTGAAAGATTTGGAGCTCAGAAAGCGACAAATCATGCCGATTCTTATAACAACATATCTTCATCAGTACTTAATATCAATCAAGGGGCTTCACATTCTGTTGATGCTGGACATGGACTTGTTGGAAACTACAATGGAGCAATGAATGGTATTGTAGGAGAAACATATGATGGTGGTAGTGAGCTTGTAAGATACTCTGTTCCAGCTCAAGGTCTTGATGACAGCAAGATTGTTGAGTTAGCTGTTGTAGGAATGGATGAACTAATAAGATTGGATCAAACTAGTGGGCCTCCTTTGTGGTTTCCCACGAACTCTCTTAATGAGATTCTAAATGGAGAAGAATATATGTTGCAGTTTCCTAGAAGCATTGGTCCTAACCCAATGAAGTTAAGACATGATGGCTCTAAAGAATCTGTTGTGGTCTTCATAAATCCTATTAGTTTGGTTGATATCTTTATGGATGTGAGTCAATGGTCAAATATGTTTTGTGGAATTGTTTCGAGAGCTGCAACACTCAATGTCCTTTCAACTGGAGTGGCAGGAAATTATGACGGAGCTTTACAAGTGATGTCAGCTGAATTTCAGGTTGCTTCACCATCCATTCCTACTCTTGAACACTATTTTGTGAGATACTGTAAACTGCTTCCAAACAGTATATGGGTAGTGGCTGATATTCCCTTGGATAATTTTTCTCCTACATCTATCTCAAGAACCAAAAGAAGAGTTTCTGGTTGTTTGATTCAAGAACTACCACATGATTATTCTAATGTTACATGGATTGAACACTTAGAAGTTGAGGATAACGAGGTGCAAACTATATATACACCTCTAATTAATTCTGGACTTGCATTTGGAGCTAAACGGTGGATAGCCATATTACAAAGACAATGCGAACGTCTTGTTTGTTCAATGTCCAACAACATACCTATTACAGGAAACATCGGTGTGAGGATGACTAATGCGGGAAAGGAAAGTATGTTGAGGTTAGCAGGAAGAATGGTAACTAGCTTTTGTACTAGTATTGGTGCTTCTACAGCACATGCTTGGACAAATCTACCATCAAATGGGTCTGAGGAAATAAAGGTTATGACCAGAAAATATATCGACGAATCAGGCAGTGATAGACCCTCTGATGTAGTGCTAAGTACTGCTACTTCTTTTTGGCTTCCCATTCCTCCGAAAAGGGTTTTTGAGTTCCTTCGTAATGAAAGCTCAAGAAGTCAATGGGATATTCTCTCCACTGGATGTACAGTTCAAGATGTGGCTCACATTGCCAATGGTTGTGATCCTGGCAATTGTGTTTCTTTACTTCGTGTTTGTAGTGGAAATACAAGTCAGAGTAACAGGGTGGTACTACAAGAGAGTTGCACGGATATAACCGGCTCATATGTAGTATATGCGCTGGTTGATGTCATTGCAATGAATGTAGTATTATGTGGCGGAGACTCAAATTGTGTTACTATGATTCCTTCTGGATTCACTATTCTTCCAGATGGAGGATCAATTATGAATAATGGATCTGGAGGTTCTCTTATCACAGTTGGATTTCAGATTTTAGTTGATTCTGTTCCACATACAAGGCTAGCTCTAGGTTCAGTCACCACTGTTAACACTTTGCTCAAGGCCACTGTGGAAAGGATTAAAGTTGCATTGATGCCTAAATGA 2199 0.4002 MFGSSSSSSSQHDHIMNNMFEDELLKANDEHYKMEFGGPSRQSDEQQQPNKDEQQQPNQCLKKRNYRRHTQEQIEELDAFFKRNAHPDERERKELGRRLGLEPSQIKFWFQNRRTGLKVRSEREENELLKAEIEKLRAEMNRHKETPTTCNVCGIPATLVMSNEQQQLRLENALLRKELERFGAQKATNHADSYNNISSSVLNINQGASHSVDAGHGLVGNYNGAMNGIVGETYDGGSELVRYSVPAQGLDDSKIVELAVVGMDELIRLDQTSGPPLWFPTNSLNEILNGEEYMLQFPRSIGPNPMKLRHDGSKESVVVFINPISLVDIFMDVSQWSNMFCGIVSRAATLNVLSTGVAGNYDGALQVMSAEFQVASPSIPTLEHYFVRYCKLLPNSIWVVADIPLDNFSPTSISRTKRRVSGCLIQELPHDYSNVTWIEHLEVEDNEVQTIYTPLINSGLAFGAKRWIAILQRQCERLVCSMSNNIPITGNIGVRMTNAGKESMLRLAGRMVTSFCTSIGASTAHAWTNLPSNGSEEIKVMTRKYIDESGSDRPSDVVLSTATSFWLPIPPKRVFEFLRNESSRSQWDILSTGCTVQDVAHIANGCDPGNCVSLLRVCSGNTSQSNRVVLQESCTDITGSYVVYALVDVIAMNVVLCGGDSNCVTMIPSGFTILPDGGSIMNNGSGGSLITVGFQILVDSVPHTRLALGSVTTVNTLLKATVERIKVALMPK* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6113 732 MobiDBLite consensus disorder prediction 40 61 - -
Tpr2g6113 732 CDD START_ArGLABRA2_like 253 476 - -
Tpr2g6113 732 MobiDBLite consensus disorder prediction 1 15 - -
Tpr2g6113 732 Pfam START domain 274 477 IPR002913 GO:0008289
Tpr2g6113 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 38 730 IPR042160 -
Tpr2g6113 732 CDD homeodomain 63 114 IPR001356 GO:0003677
Tpr2g6113 732 ProSiteProfiles START domain profile. 248 480 IPR002913 GO:0008289
Tpr2g6113 732 SMART START_1 257 477 IPR002913 GO:0008289
Tpr2g6113 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 38 730 - -
Tpr2g6113 732 Coils Coil 119 146 - -
Tpr2g6113 732 Pfam Homeodomain 63 115 IPR001356 GO:0003677
Tpr2g6113 732 SUPERFAMILY Bet v1-like 499 725 - -
Tpr2g6113 732 MobiDBLite consensus disorder prediction 16 38 - -
Tpr2g6113 732 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Tpr2g6113 732 MobiDBLite consensus disorder prediction 1 64 - -
Tpr2g6113 732 SUPERFAMILY Homeodomain-like 49 118 IPR009057 -
Tpr2g6113 732 Gene3D - 44 134 - -
Tpr2g6113 732 Coils Coil 165 185 - -
Tpr2g6113 732 SUPERFAMILY Bet v1-like 257 477 - -
Tpr2g6113 732 SMART HOX_1 62 124 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6113 Tpr-Chr2 74092433 74097606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6113 1 729 Homeobox Transcription Factor Family AT4G04890 55.020 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g6113 START 2.3e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6113 K09338 - gmx:100815499 783.482