Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6079 ATGGATTCCACTGAGCTTATTTCTCAACAATGGAGTTCTCTTAGCGGACTCTACACTGCCGAGGAAGCTGACTTTATGAACCACTTTCTTGGTAACTCCTCACTCCCACAACACCTCTATCAAAATTCCAATTTTCGAACTGAATCTGCATTTTGGCCTTCCCATGATTCCACAATTGTTACTGTCACAAAAAACAACAATGACGACTCTAACTTTGCTGCGCAAGTTCGTAGCTCAACTTACGATAGTAGTAATATCTTCCCCGCAACAAGTTGCATCGTCAACAATCCAGTAACCAACTTTGGCTATATTTCTATGGGTCTTTCCATAGGCGATTCCAAATTCACACCATTTACAACGCAACCTGATGAAAAAGTTCTAGCTCACAAAAATTTGCAGGCCCCAAAGGAACATGAAATACTAATTTCTGAACCAGAAGAGGATAAAACCACTAGCACAGAAAAATCAGGAAAAAGATCTAGAAGCTCCAATGAGGTCCCAAAGAACAAGAGGAATGTTAAATGCAGGAAGAATATGAGATGTGCTTCTAGAAGCACTGAGGATCAGACCATAAGCAGTTGTTGTTCAGAGGATGAATCCAATTCTTCTCATGAGCTACGTGGAGGGTCATCTTCAAGTTTGAGCCAGAACGATTCTACAGCTCTCAAGTTAAGTGGCAAATCAAGATCAAGCAGAGGTCCTGCTACTGACCCACAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTTGTCCCAAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTAAGCTCTGATGATTTGTGGATGTACTCTCCTATTGCTTACAATGGAATGAACATTGGACTGGAACTTGGTATTACCCCAACAAAGGGTATGCATAGCATCGCAATAAAAGAACATTCAGCAGTTTAA 996 0.4056 MDSTELISQQWSSLSGLYTAEEADFMNHFLGNSSLPQHLYQNSNFRTESAFWPSHDSTIVTVTKNNNDDSNFAAQVRSSTYDSSNIFPATSCIVNNPVTNFGYISMGLSIGDSKFTPFTTQPDEKVLAHKNLQAPKEHEILISEPEEDKTTSTEKSGKRSRSSNEVPKNKRNVKCRKNMRCASRSTEDQTISSCCSEDESNSSHELRGGSSSSLSQNDSTALKLSGKSRSSRGPATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGLELGITPTKGMHSIAIKEHSAV* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6079 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Tpr2g6079 331 Pfam Helix-loop-helix DNA-binding domain 244 284 IPR011598 GO:0046983
Tpr2g6079 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 316 - -
Tpr2g6079 331 MobiDBLite consensus disorder prediction 130 172 - -
Tpr2g6079 331 MobiDBLite consensus disorder prediction 130 241 - -
Tpr2g6079 331 CDD bHLH_AtIND_like 235 297 - -
Tpr2g6079 331 MobiDBLite consensus disorder prediction 184 237 - -
Tpr2g6079 331 PANTHER TRANSCRIPTION FACTOR BHLH54 6 316 - -
Tpr2g6079 331 Gene3D - 238 292 IPR036638 GO:0046983
Tpr2g6079 331 SMART finulus 240 289 IPR011598 GO:0046983
Tpr2g6079 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 299 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6079 Tpr-Chr2 73865811 73867634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6079 10 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.450 1.87e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g6079 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6079 - - mtr:MTR_5g005110 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6079 2 73865811 73867634 Tpr1g0486 1 4108867 4111033 PCT