Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6078 ATGGCTACAACACCAATGGCGTCTGGTCGAGAGTTGGCGAACCCTCCATCTGATGGAATCTCCAACATTCGCTTCTCTAATCACAGTGATAATCTTCTCGTTTCATCTTGGGACAAGACAGTGCGTCTCTACGATGCAACCGCAAATGTGCTTAGAGGAGAATTCCTTCACGGTGGACCTGTTCTTGACTGTTGTTTCCACGACGACTCTTCTGGATTCAGTGCCTCCGCCGATAACACTGTTAGGCGCCTCGTTTTCGCCACTGGTAAGGAGGATATTTTGGGAAAGCATGATGCTCCCGTTCGTTGTGTTGAGTACTCTTATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCATAAAGTGTTGGGACCCTAGGGGTGCAAGTGGACAAGAGCGCACTCTTGTTGGGACGTATCCACAGCCTGAGCGTATTTACTCTCTATCTCTTGTTGGACATCGGCTTGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGACTTGAGGAACATGTCTTGTCCTGAACAACGGAGGGAATCTTCATTGAAATATCAAACCAGATGTGTACGCTGCTACCCAAATGGAACAGGATATGCACTTAGTTCCGTTGAAGGGAGGGTTGCAATGGAATTCTTTGACCTATCTGAAGCTAGCCAGGCAAAGAAATATGCTTTCAAGTGTCACAGAAAATCCGAAGCTGGAAGGGATATTGTCTACCCTGTAAATGCCATGGCATTCCACCCCATATATGGTACATTTGCCACAGGAGGTTGTGATGGTTTTGTTAATGTATGGGACGGAAACAACAAAAAGAGGCTGTATCAGTATTCAAAATACCCAACTAGCGTTGCTGCACTCTCATTTAGCAGAGATGGACGTCTCCTAGCTGTTGCGTCAAGTTACACTTTTGAAGAGGGACTGAAACCCCATGAACAAGATGCTATCTACGTTCGCAGCGTGAATGAAATTGAGGTCAAGCCAAAACCCAAAGCCCTTCCTAATCCTACAGCGTGA 1023 0.4614 MATTPMASGRELANPPSDGISNIRFSNHSDNLLVSSWDKTVRLYDATANVLRGEFLHGGPVLDCCFHDDSSGFSASADNTVRRLVFATGKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTIKCWDPRGASGQERTLVGTYPQPERIYSLSLVGHRLVVATAGRHVNVYDLRNMSCPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGLKPHEQDAIYVRSVNEIEVKPKPKALPNPTA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6078 340 SUPERFAMILY WD40 repeat-like 16 303 IPR036322 GO:0005515
Tpr2g6078 340 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 7 335 - -
Tpr2g6078 340 SMART WD40_4 8 45 IPR001680 GO:0005515
Tpr2g6078 340 SMART WD40_4 134 170 IPR001680 GO:0005515
Tpr2g6078 340 SMART WD40_4 221 269 IPR001680 GO:0005515
Tpr2g6078 340 SMART WD40_4 87 126 IPR001680 GO:0005515
Tpr2g6078 340 SMART WD40_4 48 85 IPR001680 GO:0005515
Tpr2g6078 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
Tpr2g6078 340 PANTHER MRNA EXPORT FACTOR AND BUB3 7 335 - -
Tpr2g6078 340 Gene3D - 3 334 IPR015943 GO:0005515
Tpr2g6078 340 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Tpr2g6078 340 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Tpr2g6078 340 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Tpr2g6078 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
Tpr2g6078 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 278 IPR001680 GO:0005515
Tpr2g6078 340 Pfam WD domain, G-beta repeat 19 45 IPR001680 GO:0005515
Tpr2g6078 340 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Tpr2g6078 340 Pfam WD domain, G-beta repeat 228 269 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6078 Tpr-Chr2 73858178 73862217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6078 94 311 U-box Gene Family AT2G33340 25.446 8.51e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6078 K02180 - cit:102608840 651.358