Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6068 ATGAATGTCAATAAGAGACCATCGAGCAATTATGCAAAGACAATTCAAAAAGAGGTGACAAATCAGATGCGTGAGATTCTTGTGGATTGGTTAGCGGAGGTTACAGAGGAATTCAAGTTTGCTTCTGATGCCTTATATCTCACCGTTTCTTGCATTGATCGCTTCCTCTCTATTCGTCCCCTCAAAAGAAAACACCTTCAGCTTCTCGGCGTTTCATCCATCTTCATTGCTTCAATTTTTATGGGAGCTGCTGGTCAGACAGATTTTCAGCATTCCAACCAGCAATTGGAATTCTTGGCTTGTTATCTTTTGGAGCTCTGCCTATTATGCTTGAAATGCGTCAAGTTCTTGCCTTCCATAGCGGCAGCATCTGCTTTATTTCTATCGAGGTTTATAATTCAACCAAACCACCACCCTTGGAATCAAGTGTTACAATGCCAAACAGGATATAAGCCACTTGAGCTGCAAGAATGTGTACTTGCCATACATGTTATGCACTCAACTATCACAGTGTGCCCTTTACAAGCAGTACGACAAAAGTACTTGAAACCGAAGAAAGCAGGACCATCAATTATAAAACTGGGACTTGAAGAATTAAATGAATGGTTTGTCTTTGAAGGCATGAATTCATGGATATGTAGTCATGAAGATGAATAA 657 0.4018 MNVNKRPSSNYAKTIQKEVTNQMREILVDWLAEVTEEFKFASDALYLTVSCIDRFLSIRPLKRKHLQLLGVSSIFIASIFMGAAGQTDFQHSNQQLEFLACYLLELCLLCLKCVKFLPSIAAASALFLSRFIIQPNHHPWNQVLQCQTGYKPLELQECVLAIHVMHSTITVCPLQAVRQKYLKPKKAGPSIIKLGLEELNEWFVFEGMNSWICSHEDE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6068 218 SUPERFAMILY Cyclin-like 4 78 IPR036915 -
Tpr2g6068 218 CDD CYCLIN 23 78 IPR013763 -
Tpr2g6068 218 Pfam Cyclin, N-terminal domain 4 78 IPR006671 -
Tpr2g6068 218 PANTHER CYCLINS 84 186 IPR039361 -
Tpr2g6068 218 PANTHER CYCLINS 4 80 IPR039361 -
Tpr2g6068 218 Gene3D - 7 78 - -
Tpr2g6068 218 SUPERFAMILY Cyclin-like 90 190 IPR036915 -
Tpr2g6068 218 Gene3D - 89 185 - -
Tpr2g6068 218 Pfam Cyclin, C-terminal domain 83 185 IPR004367 -
Tpr2g6068 218 SMART Cyclin_C_2 71 190 IPR004367 -
Tpr2g6068 218 ProSitePatterns Cyclins signature. 24 55 IPR006671 -
Tpr2g6068 218 SMART cyclin_7 96 164 IPR013763 -
Tpr2g6068 218 SMART cyclin_7 29 95 IPR013763 -
Tpr2g6068 218 PANTHER CYCLIN-A3-1-RELATED 84 186 - -
Tpr2g6068 218 PANTHER CYCLIN-A3-1-RELATED 4 80 - -
Tpr2g6068 218 PIRSF Cyclin_A_B_D_E 1 80 IPR039361 -
Tpr2g6068 218 PIRSF Cyclin_A_B_D_E 85 199 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6068 Tpr-Chr2 73807176 73809456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6068 6 181 Core Cell Cycle Gene Families AT1G47230 40.969 2.79e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6068 K06627 - egt:105959253 154.066