Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6062 ATGGGAAAAGAGGAAGTGGTGGTGCTGTCGTCGTGCTCTTCTGATTCTGGCGATGATGATGATGATGATGGTTATGAAGTTGAAGAACGGAAATCTCAGAATGTTAAAGCCCTCATAAGTGGTAACCTGATATTGAAGAGACAATCGTTGCTTCCGCGAGTATTGTCGACAAATGGAGCGGCTTCTGTTTGCAGAAAACCTTTCAAACCTCCATCTGATGCTTCTTCTTATAACAGTCAGCAAGACCTTGCTCGTAGACTCTCTGCTCGCAAAAGAGAAGGGGTTCAATTTATGTTTGACTGTGTCGCCGGACTATGTGACACACCCGACATCTATGGATGCATTTTGGCAGATGATATGGGTTTGGGTAAGACACTGCAGTCCATCACATTACTGTATACTCTTCTTTCTCAAGGCTTCCAGGGGAACCCTATGGTTCGAAAGGCCATCATTGTCACTCCTACCAGCCTCGTCAGCAATTGGGAAGCTGAAATCAACAAGTGGCTTGGACAGAGAGTTCGTCTTATTGCTCTTTGTGAAACCACTAGACAAGATGTTATCTCTGGGATTAACAGTTTTACAAGTCCCCAAAGCAAATTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCATCAAAGTTTAGCTCTAGCGACTCGTGTGATCTCCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTCTGCAGAATGACTTAGAAGAATTTTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGGCATTGCACATTTTCGACGTTACTTTGAGGCGCCAATAATTTGCGGAAGAGAACCCGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGACGGACTAATGCTTTGTTATCAAATCACTTACCACCGAAGATAATCGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAGTCCAAAAATGTTAAACGGGCGATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACAATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCCGGAAGGTCTGGTTCATGGACTGGAGGGCATGGAGGCTGGGTTGAGCTTTCCGGGAAAATGCAAGTCTTGGCAAGATTACTTGCTCAATTACGTCAAAGAACAAATGACCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAACGGCAAAAGTTGGTCAACTGCTTGAATGACCCATCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGCCAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAAAGTGATAGCGCCGTGGCACAGGGTAACCTTCTTTCAACAGAGGATCTTCGCAATTTGTTTACTTTTGAAGAGAATGTAAAGTCAGAGATTCATGAAAAGATGCGATGCGGTCGGTGCCAACCATATGATGGGCCTCAAGACACTGATGTCTTATCTACAATGATTAATGGTGAATGCGATGATGATGACACCTCTGATATAGGTGGATTTGCTGAAATTGCAGGCTGCTTAGGGAATTTGAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTTCCCAACCTCTGTACCAGATGCTATCCTTCAGGCTGCAGCTGGCGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCCATAATCAGTCCCAAGCCACAGAAAAAGGAATTACACCAGCCAAGGAGGAACGTCGAGCGCAAATCCACCCCTTTTGCTTTACATAATAAGTTAGTACCACTACGTTCTGCATCCAGTATTGCCAAGGTGTCATGCTCATCTCCAATTGCTTGGAAGAAGGAAGCAACAAATTGTGTAAGAATTGCCAAAAATATCTCCACGAGTGTAGCATTAAACACCAAACACTCTCTTGTAAACGAAGTATCAAGACAGAAAAGAGCATGCCCTGTTGATACCAATGATGGGCACTCTCCTGTAAATGAAGTATCACAGAAAAAACCATGTCATGTTGATAACAATGATGATGACTTTGAGTAA 2550 0.4259 MGKEEVVVLSSCSSDSGDDDDDDGYEVEERKSQNVKALISGNLILKRQSLLPRVLSTNGAASVCRKPFKPPSDASSYNSQQDLARRLSARKREGVQFMFDCVAGLCDTPDIYGCILADDMGLGKTLQSITLLYTLLSQGFQGNPMVRKAIIVTPTSLVSNWEAEINKWLGQRVRLIALCETTRQDVISGINSFTSPQSKLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGHGGWVELSGKMQVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQSDSAVAQGNLLSTEDLRNLFTFEENVKSEIHEKMRCGRCQPYDGPQDTDVLSTMINGECDDDDTSDIGGFAEIAGCLGNLKRSEKQVGNPLEEDLSSWGHHFFPTSVPDAILQAAAGDEVTFVFTNQVDGKLVPVDSIISPKPQKKELHQPRRNVERKSTPFALHNKLVPLRSASSIAKVSCSSPIAWKKEATNCVRIAKNISTSVALNTKHSLVNEVSRQKRACPVDTNDGHSPVNEVSQKKPCHVDNNDDDFE* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6062 849 Gene3D - 350 619 - -
Tpr2g6062 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 328 IPR027417 -
Tpr2g6062 849 MobiDBLite consensus disorder prediction 819 849 - -
Tpr2g6062 849 CDD DEXHc_RAD54 92 328 - -
Tpr2g6062 849 MobiDBLite consensus disorder prediction 1 28 - -
Tpr2g6062 849 CDD SF2_C_SNF 439 567 - -
Tpr2g6062 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 708 IPR027417 -
Tpr2g6062 849 Pfam Helicase conserved C-terminal domain 447 555 IPR001650 -
Tpr2g6062 849 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 605 IPR001650 -
Tpr2g6062 849 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 48 735 - -
Tpr2g6062 849 PANTHER SNF2/RAD54 FAMILY MEMBER 48 735 - -
Tpr2g6062 849 Pfam SNF2-related domain 108 396 IPR000330 GO:0005524|GO:0140658
Tpr2g6062 849 SMART helicmild6 472 556 IPR001650 -
Tpr2g6062 849 Gene3D - 65 327 IPR038718 -
Tpr2g6062 849 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 278 IPR014001 -
Tpr2g6062 849 SMART ultradead3 83 286 IPR014001 -
Tpr2g6062 849 Gene3D - 328 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6062 Tpr-Chr2 73726983 73735428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6062 435 614 RAD5 or RAD16-like Gene Family AT5G43530 34.807 4.97e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr2g6062 SNF2_N 7.8e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6062 K10875 - gmx:100781631 1196.03