Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6033 ATGGGTGGAAATGGTAAACACAGATGGAAAATCTCCTTCCATCGTTCTTCCACTCATCCTAGTAGAAACTCACAACCTCCAAAAGAGTTTATATGTCCTATTACCGCTTCATTAATGTCCGACCCGGTCGTTGTTACTTCGGGTCAAACCTTTGAACGCCTCGCCGTCGAAATTTCCACCGAATTAAAATTCTCCCCCATTTTAGACGACGGAACCCGACCCGATTTCTCAACTATCATCCCCAATTTGGCCATCAAAACAACCATCACAAACTGGTGCGACAAATCCCGCACCCAATACCCTCCCACACCTGATTACACCACCGTGGAGAAGCTAATTAAAGAAGCAATGGCTGCGGCGGCGGCGGAGAAGGAAGAACCGATTAGGGTTTCTGAAAAGGAGCTGCTCAACGCGGTGGCGGATAATCCGCCGGTGATATTCTCCCACGCTGCTACTGAGTTAGGTCCACGTGTCAACCGTTTCAACTCGGGATCTTCCTCTGAGGAATCGGTGATAATTGGGGAAAGTCCTGGAACGCCTTTACCTTTCACGCTTCGTCCAACGTGTTTCTCTCCTTCTTCATCTTCCTCGTTCGAGATCGAAGTTCAAAACCCTAACGTTTCTTCTCCTTCGGAAGAAGAAGAAACTCTACTGAAGAAGCTGAAGAGCAACGAGGTTTTTGAACAAGAGCAAGGAGTGATTACTCTTAGAAGTATCACTAGGAACAGAGAAGAAGCTAGGGCTTCGCTATGCACTTCGCGGATTCTCGCGATTCTGCGTTCTCTGATTCCTTCCCGTTACGTCGTCGTTCAGGTCAACGCTATTGCTTCTTTGGTCAACCTTTCGCTTCAGAAATCAAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCGCTTCTCATTGATGTGTTGAAGGGGGGATCCAGTGAATCTCAGGAACACGCTGCGGGTGCACTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCTATTGGTGTTCTAGGGGCGTTGCAGCCGCTAATGCATGCGCTGAGGTCTGATTCCGAGCGAACTCGTCATGACTCCGCGCTTGCACTCTATCATTTGACTCTAGTTCAGAGTAACAGATTCAAGCTTGTGAAACTCGGGGTGGTTCCGACTTTGCTTTCGATGCTGATGACAGGGACAATGGCGAGTAGGGTGTTGTTGATTCTGTGCAATCTTGCTATGTCTGTGGAGGGAAGGACGGCGATGCTGGATGCCAATGCGGTGGAGTGTATGGTGAATTTGTTGAGGGGGAACGAGTTGGACTCGGAGGCAACTCGGGAGAATTGTGTGGCAGCGTTGTATGCATTGAGTCATGGAAGTTTGAGATTCAAAGGGTTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTGAGGGTGATCGAAGAGACAGGGACGGAGAGGGCGAGGGAGAAGGCTAAAAGGGTGTTGCAGAAGATGAGGGGTTTTGAAGATGGTGATGATGAAGATGATTCTGGGTTTGATAGTCTTTTTGAATCAAGCGGGTTGACTCGAACAAGGTACCGAGGTGCTGGAGCTAGGAACAACAACCTTGTCAATTCAACTACATTTTAG 1599 0.4828 MGGNGKHRWKISFHRSSTHPSRNSQPPKEFICPITASLMSDPVVVTSGQTFERLAVEISTELKFSPILDDGTRPDFSTIIPNLAIKTTITNWCDKSRTQYPPTPDYTTVEKLIKEAMAAAAAEKEEPIRVSEKELLNAVADNPPVIFSHAATELGPRVNRFNSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVSSPSEEEETLLKKLKSNEVFEQEQGVITLRSITRNREEARASLCTSRILAILRSLIPSRYVVVQVNAIASLVNLSLQKSNKMRIVRSGFVPLLIDVLKGGSSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYHLTLVQSNRFKLVKLGVVPTLLSMLMTGTMASRVLLILCNLAMSVEGRTAMLDANAVECMVNLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDEDDSGFDSLFESSGLTRTRYRGAGARNNNLVNSTTF* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6033 532 Pfam U-box domain 27 96 IPR003613 GO:0004842|GO:0016567
Tpr2g6033 532 SUPERFAMILY RING/U-box 14 101 - -
Tpr2g6033 532 MobiDBLite consensus disorder prediction 1 28 - -
Tpr2g6033 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 332 IPR000225 GO:0005515
Tpr2g6033 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 103 IPR013083 -
Tpr2g6033 532 SMART arm_5 284 324 IPR000225 GO:0005515
Tpr2g6033 532 SMART arm_5 405 448 IPR000225 GO:0005515
Tpr2g6033 532 SMART arm_5 243 283 IPR000225 GO:0005515
Tpr2g6033 532 SMART arm_5 325 365 IPR000225 GO:0005515
Tpr2g6033 532 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Tpr2g6033 532 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Tpr2g6033 532 SUPERFAMILY ARM repeat 215 488 IPR016024 -
Tpr2g6033 532 Gene3D - 210 490 IPR011989 -
Tpr2g6033 532 Pfam Armadillo/beta-catenin-like repeat 325 364 IPR000225 GO:0005515
Tpr2g6033 532 Pfam Armadillo/beta-catenin-like repeat 287 323 IPR000225 GO:0005515
Tpr2g6033 532 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 521 - -
Tpr2g6033 532 PANTHER U BOX DOMAIN-CONTAINING 1 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6033 Tpr-Chr2 73272676 73275485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6033 1 532 U-box Gene Family AT5G65200 55.971 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6033 - - gmx:100815075 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6033 2 73272676 73275485 Tpr2g6033 2 73272676 73275485 ECH