Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g6016 ATGACTGCAACTCATCATCGCCGTCCCTTATCCTTCCCCGCCGTTCACCCCTGCAAATCCATATATCCGGCAACCCTCCTAACTGCACTAATCACTCTCTCACAAACTATAATCACTTTCCAACCAAACTCCTTTCCCACACAAAAACGAAACACCAGAGAAACTAAACGCCAAATCCAAATTCTCCTCATTTTCTTCCAACAACTTCAATCCCATAACTCTCATATCCTAAAACAAACCATTCCAATCTTCTCAGAGCTTTATTTCACCCTCCAAAAAATCCATTTCTTATTCCAAGATTGTTCCCTCAAAACTACACGCCTCTGGTTTCTCGTCAAATCTCAATTTATTGCCACACAGTTTCATCTTCTCACCCATTCCGTTTTGGAATCTCTCGACGCGTTACCTCTCCACCTCATCGATGTTTGCGATGAGGAGGTTAAAGAGGTAATTCAACTACTAATCAAACAAAAGAGAAAAAACAATCTCCAACTCGACCATAATGACGAACGTGAAGCCAAACGCGTTGATATAATTTTGAATCAATTCGAGAAAGGAATCGAACCTGAAATTGATTCAATCAAACAAGTTCTCAATTATGTTCAAATCAAAACTTGGTTCGATTGTAATGAAGAAATCAAATTCCTCCAAGACGAATTACAAAATCAAAATCAAGAGAAAGAGTTGGTTCATTTGTTGAGTGGTTTAATTGGTTTTTTATGTTATTGTCGTGTGGTAATATTCGAAACTCTAGATTTTCAATTGTTAAACCATAACAATGGATCTCAATTCGGTTCTAGTATTGAGAAATTAATCTCTGTAACACCAGATGATTACCGTTGTCCAATTTCTCTTGAGCTAATGTTAGATCCTGTAACCGTTTCCACTGGCCAAACATATAACAGAACTTCAATTCAGAAATGGTTTGAAGCCGGAAACATGACATGTCCGAAAACCGGGGAGAGACTCATTTCCACAGAGTTTTTTCCCAACACAGCACTGAAAAATCTTATCCAACAATTCTGTTATGATAAGGGCATTTCAATTTTAAGTTTAACTACCAAACCTCATAGCGTAACTGCACCCACTGTTAGTCCTGGTAGTTCGGCTGCAGCTCACGCGATACAGTTTGCGTCATGGTCACTTGCTCGGAGACTAGTTTTCGGAACTGATGAACAGAAAAACAAAGCAGCTTATGAGATTCGTTTACTAGCGAAATCAAATGTTTTTAATACGGCATGTTTGGTTGAAAATGGAACTGTACCACCTTTGCTTGATCTTGTTTTAACTTCAACGATGCAAGAGAATGCAATTTCTGCTCTTTTGAAGCTTTCAAAGCATAGTAATGGCCGCGAAGTTATCATGGAGAGTCGAGGATTAAAAACAATTGTTAAGGTTCTCAATAGAGGGTACAGTTTAGAAGCTCGTCGTGTTGCAGGTGGTATAATATTTTATCTCACTTCGGTGAAAGAGTATAGAAAATTAATAGGTGAAAATTCAGAGGCAGTTTCTGGTTTAGTGAAATTGATAAAGGAAGGAACAATTCGAGGAAAAAAGAGCGCAGTGGATGCGATTTTCGGGTTGTTATTGCTTGCTAAGAATCATTCTAAGGTGCTTGCTTCTGGTGTTGTTCCTGTGATAATTAGCGTTTTGGCTTCTTCTGATAAACGTTATGTTGTTAATGATTGTTTAGCCGTTTTGGTAGCATTGGCGGAGAGTGTGGAAGGCTCTCGTGCGGTATTAGAATGTTCGGGTTTTGGTTTGGTTGTTCGGATTTGGCAATCTGCAACTTTGCGTGCAGAGAAGGAGTACTGTGTTTCCATTTTGTCGTCGCTGTGTGTTAATATTGGTGTGGAAGTTGTTGATGTTCTGGCGAAGAATGCTTCCGTTGTTATGCCTTTGCTTTATTCACTTCTTACGGATGGTACACCTCAAGCAGAAAAGAAAGCACGTAGACTTATTAATGTTTTGCAAGAATTTGATGAGAAGAGAACTTTGGGAATGGTGGGTTCTTCTGTTATGCAGCAAAGATTGCTTCAGTTGAATTAG 2049 0.3904 MTATHHRRPLSFPAVHPCKSIYPATLLTALITLSQTIITFQPNSFPTQKRNTRETKRQIQILLIFFQQLQSHNSHILKQTIPIFSELYFTLQKIHFLFQDCSLKTTRLWFLVKSQFIATQFHLLTHSVLESLDALPLHLIDVCDEEVKEVIQLLIKQKRKNNLQLDHNDEREAKRVDIILNQFEKGIEPEIDSIKQVLNYVQIKTWFDCNEEIKFLQDELQNQNQEKELVHLLSGLIGFLCYCRVVIFETLDFQLLNHNNGSQFGSSIEKLISVTPDDYRCPISLELMLDPVTVSTGQTYNRTSIQKWFEAGNMTCPKTGERLISTEFFPNTALKNLIQQFCYDKGISILSLTTKPHSVTAPTVSPGSSAAAHAIQFASWSLARRLVFGTDEQKNKAAYEIRLLAKSNVFNTACLVENGTVPPLLDLVLTSTMQENAISALLKLSKHSNGREVIMESRGLKTIVKVLNRGYSLEARRVAGGIIFYLTSVKEYRKLIGENSEAVSGLVKLIKEGTIRGKKSAVDAIFGLLLLAKNHSKVLASGVVPVIISVLASSDKRYVVNDCLAVLVALAESVEGSRAVLECSGFGLVVRIWQSATLRAEKEYCVSILSSLCVNIGVEVVDVLAKNASVVMPLLYSLLTDGTPQAEKKARRLINVLQEFDEKRTLGMVGSSVMQQRLLQLN* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g6016 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 348 IPR013083 -
Tpr2g6016 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 459 IPR000225 GO:0005515
Tpr2g6016 682 SUPERFAMILY RING/U-box 264 348 - -
Tpr2g6016 682 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Tpr2g6016 682 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Tpr2g6016 682 Gene3D - 371 675 IPR011989 -
Tpr2g6016 682 PANTHER U BOX DOMAIN-CONTAINING 5 666 - -
Tpr2g6016 682 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Tpr2g6016 682 CDD RING-Ubox_PUB 279 321 IPR045210 -
Tpr2g6016 682 PANTHER OS07G0532750 PROTEIN 5 666 - -
Tpr2g6016 682 SUPERFAMILY ARM repeat 391 657 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g6016 Tpr-Chr2 72849596 72851857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g6016 7 680 U-box Gene Family AT1G10560 37.339 1.88e-145 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g6016 - - gmx:100810963 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2936 5 52385780 52388231 Tpr2g6016 2 72849596 72851857 ECH
Tpr2g6016 2 72849596 72851857 Tpr2g6016 2 72849596 72851857 ECH