LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g5992	ATGGAAGCAAAGAAAGAGGAGGCACTTAAAGCGATAGCGAATGCTGAGAAAAGATTTGCTCATAGAGACTTTGTTGGAGCAAAAAGTTATGCTTTAAAAGCCAAAACACTGTGTCCTGGATTGGAGGGTATATCTCAATTGGTGACCACTTTTGAAGTTTACATTGCCTCTCAAGTTACCTGCAATGGTGAACTAGATTGGTATTCCATTATGGGTTTAAAACCTTCGACAAATATAGAAGCTGTGAAGAAACGGTACAAGAAGATGGCTGGGTTGCTCCACCCTGATAATAACAAGTGTGTTGGAGCTGATGGGGCATTTCATCTTGTTTCTGAGGCATGGAGTAGGCTGTCTGGTAGTTATGACCTGAAGAGAAATGCACAATCGGGTGCTGGGCATGGACTTCATCACAAGGGTTTGTCTTCGGTTCATGCCTCTGGTGGTAATCAGGATACTTTCTGGACGATCTGTACTTCTTGCAAAGTTCAGTATGAGTATCTGCGCAAGTATATAAATAAGAAACTTTCTTGTAAGAATTGCCGTGGGGTTTTCATTGCTGTTGAAACAGCCCCGGCAAATGGTTCATTCCCGTATTGTCCTTGGTCTTATGGATCTAGCAGTGGCTATGGAAGCCATTCATATGATGGTGTTACATATGTTCCCAATAATGGCGCCTATTTCAATGGTAACGGAGTTGCCGGATACCACTCGGCACACGGGTATGAGTATGCTTCAAATGTTCCATATCAAATTAACTCTGCTGGATATGTCAATCAGAATGGATCAACAACCTTACCTGCTCGTCAGTCCAATGGGCATGCAAAGAGGGGAAGACCAAAAGTTAAATCAGGAGCTGATAGGAAGCATTGCATGACAGAGACAGTGGTCAATATAAACTCAGATGTATCATTCTCCCGGAATGAACCACAGGAGGTAAAGCCGAATAGACCTGAGAAGAAAAGGAAAGTTCTAGGAGCCAGTTTAAGAGATGTCCATGAAGGAAAGGGTTTAAAATGTGCTTCAGAGTCAGGATTGGCTAATGGGAATGGAAGCGTTGGGCATGGCCAGAGGATTTCCAGCACAAGTGAAGTTCCAACTAAACAGTATGCCAAACAGTATTCCATGGCACCAGCTTTTGATGCAAGAAAATTATTGATTGAGAAAGCCAGGACAGAAATAAGAAAAAAACTGGAAGAGATGAAGTTGGCATCTGAAACAGCAGCTGCTCTTAATGAGACAAAAAAATCTCAAGCTGATGTTGGTCAGGTCAAAGGAGACACGCACATTAAAACAGTTCTGAATGTTTCTGATAATCAGTTAGAACATAGGAAAACTGTTCCAGTGACAATTACTGTTCCAGATCCCGACTTTCATGACTTTGACAAAGATAGGTCAGAGCCGTGCTTCAAGCCAAAGCAAATATGGGCCTTGTATGATGAGGAGGATGGGATGCCCCGCTTGTATTGTCTGATACGTGAGGTTGTGTCTGTCAATCCATTCAAGATTAACATTAGTTACTTGAGTTCAAAAACTGATAGCGAGTTTGGCCAAGTGAACTGGCTTGTTTCAGGTTTCACCAAATCTTGTGGAAATTTCAGGGCCATGACCTCTGATGTTGTTGACCAAGTTAACATTTTTTCTCATGCTCTAAGCAGGGTGAAGGCCGGTCGAGGTGGCTGTGTTCGCATATATCCAAAATGTGGAGAAATCTGGGCTGTTTACAGAAACTGGTCAACAGATTGGAACAGATCTACACCAGATGAAGTAAGGCATCAGTACGATATGGTGGAGGTGCTGGATGATTATTCCGAGGAGCTTGGTCTTTGCATTAGCCCCCTTATTAAGTTGGATGGATTCAAAACCGTGTACAAGAGGAACACAGACAAAAGTGCCATTAGATGGATTCCCAGAAGAGAAATGTTGCGCTTTTCGCATCAAGTGCCTTCGTGGTTGTTGAAGGGGGAGGAGGCAAGCAATTTGCCCGACAAGTGCTGGGACCTTGATCCAGCTGCAACTCCTGACGAGCTCCTTCATGCTGCTATAGAAGCAGCAAATGCTTCTTAG	2064	0.4336	MEAKKEEALKAIANAEKRFAHRDFVGAKSYALKAKTLCPGLEGISQLVTTFEVYIASQVTCNGELDWYSIMGLKPSTNIEAVKKRYKKMAGLLHPDNNKCVGADGAFHLVSEAWSRLSGSYDLKRNAQSGAGHGLHHKGLSSVHASGGNQDTFWTICTSCKVQYEYLRKYINKKLSCKNCRGVFIAVETAPANGSFPYCPWSYGSSSGYGSHSYDGVTYVPNNGAYFNGNGVAGYHSAHGYEYASNVPYQINSAGYVNQNGSTTLPARQSNGHAKRGRPKVKSGADRKHCMTETVVNINSDVSFSRNEPQEVKPNRPEKKRKVLGASLRDVHEGKGLKCASESGLANGNGSVGHGQRISSTSEVPTKQYAKQYSMAPAFDARKLLIEKARTEIRKKLEEMKLASETAAALNETKKSQADVGQVKGDTHIKTVLNVSDNQLEHRKTVPVTITVPDPDFHDFDKDRSEPCFKPKQIWALYDEEDGMPRLYCLIREVVSVNPFKINISYLSSKTDSEFGQVNWLVSGFTKSCGNFRAMTSDVVDQVNIFSHALSRVKAGRGGCVRIYPKCGEIWAVYRNWSTDWNRSTPDEVRHQYDMVEVLDDYSEELGLCISPLIKLDGFKTVYKRNTDKSAIRWIPRREMLRFSHQVPSWLLKGEEASNLPDKCWDLDPAATPDELLHAAIEAANAS*	688

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g5992	687	Gene3D	DnaJ domain	54	122	IPR036869	-
	Tpr2g5992	687	PANTHER	BNAC03G44070D PROTEIN	1	679	-	-
	Tpr2g5992	687	SUPERFAMILY	Chaperone J-domain	56	120	IPR036869	-
	Tpr2g5992	687	PANTHER	BNAC03G44070D PROTEIN	1	679	-	-
	Tpr2g5992	687	MobiDBLite	consensus disorder prediction	265	287	-	-
	Tpr2g5992	687	Coils	Coil	386	413	-	-
	Tpr2g5992	687	ProSiteProfiles	dnaJ domain profile.	66	132	IPR001623	-
	Tpr2g5992	687	Pfam	DnaJ domain	66	118	IPR001623	-
	Tpr2g5992	687	Pfam	Domain of unknown function (DUF3444)	449	656	IPR024593	-
	Tpr2g5992	687	SMART	dnaj_3	65	122	IPR001623	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g5992	Tpr-Chr2	72282174	72285468	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g5992	5	280	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	27.508	1.17e-22	98.6

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g5992	-		-	gmx:100792639	1009.98

Showing 1 to 1 of 1 entries