Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5990 ATGGGTCGTTGCCGAACCGCTTCACGCTCCGCCGATGATGACCCCAACCACAGACTCAAGAGAAAAAGGGCTGCTTTAAATGCTGAGAATTTAGAAACTTCATCTGCAGGCATGGGAGTAACCGATGGCAAGGTATCACTATATCATTGTAATTACTGCAACAAAGATATTTCAGGGAAGATTCGCATCAAATGCGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGTTGACACCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCAGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGAAATTGGAATGATGTTGCAGACAATGTTGGAACGAAAAGCAAAGCTCAGTGTATTGACCACTATAACGCTGTATATCTGAATTCACCATGTTTTCCTGTACCTGATTTGTCTCTTGTGAAGGGAAAGAACAAAGAGGAACTTCTTGCCATGGCAAAGGGACATCAAGTCAAGAAAGAATTTCCTCCAAATGCAGAGCTGACTCTGAAAGAAGAAACTCTCTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGAAGAAACCACTAATCAAGCAATGTCCAGGCTAACTTCAGGTGATATGAATTCAGCATGCGGTAAAAAAGCTGTTTCAAGTACAATCAAGAAGGCTTCCAATGTGAGCCAGAATATTGATGGAGTTAAGGTGGAAGAAACTCAAGTAGGTCGGAGCATTGGTGAAAAGAAACCTAAATTATCTGGGGAATATAGGCCTTCTATGAAAGCGTTGAGTGGGTACAATTCTAAGAGAGGTGAGTTTGAAATTGAATATGACAATGATGCTGAGCAAGTTTTAGCAGAAATGGAATTTAAGGACACTGATACTGAAGCTGAACGTGAAACGAAACTGCAAGTGCTCCGTATCTATGGAAAAAGGTTAGATGAGCGAAAGTACAGAAAAAAATTTATACTTGAAAGAAATTTACTTTCGCCTGATCCTTTTGAGAAATCTCTCTCACCTGAAGAGCTTGAAATATGTCAACGGTACAAGGTCTTTATGCGGTTTCACTCAAAAGAGGAGCATGAGGAGTTGCTTAAAACTATTATTGAAGAACACCGGCTTCTCAAAAGAATAAAAGACTTACAGGAAGCTCGGATTGCTGGCTGTGTAACTGCTGCTGATGCATATCAATTTGTTGAACAAAAGAGGGCAAATGAAGCTGAACAAGGTGACAATAAAGATAGTGGTCAGATTGGAACTAGTGGTAAGACTTCACAGAGGCCAAATTTTCCCAAAGTAGAGCTTGGTAGTAGCCCACACGGGATCCATAAGGGCACTACAGCATCATTTCCTGGTATCAAGGATGCACCGGCGGCCATGCAAGCTATCACAAGGTCGCTAGAAGAATGGGATATTAGTGATTTTGACGGGGCTGAATTACTATCTGAATCAGAGATAAAGCTTTGTAACGAGAGCAGATTACTACCGACACACTACCTCCACATAAGTCAAACCATGCAACAAGAAATTGCAAAAGGCAATGTAACCAAGAAATCTGATGCATATCCACTGTTCAAGTTCTCTCCAAGCAAGATTGACAGAATTTATGACATGCTCATTGAAAAAGGAGTTGTGCAACCTCAAGCATAA 1707 0.406 MGRCRTASRSADDDPNHRLKRKRAALNAENLETSSAGMGVTDGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNDVADNVGTKSKAQCIDHYNAVYLNSPCFPVPDLSLVKGKNKEELLAMAKGHQVKKEFPPNAELTLKEETLFSDGINSEESKKEETTNQAMSRLTSGDMNSACGKKAVSSTIKKASNVSQNIDGVKVEETQVGRSIGEKKPKLSGEYRPSMKALSGYNSKRGEFEIEYDNDAEQVLAEMEFKDTDTEAERETKLQVLRIYGKRLDERKYRKKFILERNLLSPDPFEKSLSPEELEICQRYKVFMRFHSKEEHEELLKTIIEEHRLLKRIKDLQEARIAGCVTAADAYQFVEQKRANEAEQGDNKDSGQIGTSGKTSQRPNFPKVELGSSPHGIHKGTTASFPGIKDAPAAMQAITRSLEEWDISDFDGAELLSESEIKLCNESRLLPTHYLHISQTMQQEIAKGNVTKKSDAYPLFKFSPSKIDRIYDMLIEKGVVQPQA* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5990 568 MobiDBLite consensus disorder prediction 430 451 - -
Tpr2g5990 568 Gene3D - 480 565 IPR036388 -
Tpr2g5990 568 CDD SANT 108 148 IPR001005 -
Tpr2g5990 568 SMART sant 104 153 IPR001005 -
Tpr2g5990 568 MobiDBLite consensus disorder prediction 423 457 - -
Tpr2g5990 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Tpr2g5990 568 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Tpr2g5990 568 Pfam Zinc finger, ZZ type 48 87 IPR000433 GO:0008270
Tpr2g5990 568 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 566 IPR034318 GO:0003713|GO:0006357|GO:0035065
Tpr2g5990 568 SUPERFAMILY RING/U-box 48 111 - -
Tpr2g5990 568 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Tpr2g5990 568 SMART zz_5 44 88 IPR000433 GO:0008270
Tpr2g5990 568 PIRSF Txn_adaptor_ADA2 35 567 IPR016827 GO:0003713|GO:0006357|GO:0035065
Tpr2g5990 568 Gene3D - 43 96 IPR043145 -
Tpr2g5990 568 ProSiteProfiles SWIRM domain profile. 480 568 IPR007526 GO:0005515
Tpr2g5990 568 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Tpr2g5990 568 SUPERFAMILY Homeodomain-like 482 565 IPR009057 -
Tpr2g5990 568 CDD ZZ_ADA2 48 96 IPR041983 -
Tpr2g5990 568 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 566 - -
Tpr2g5990 568 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Tpr2g5990 568 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Tpr2g5990 568 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Tpr2g5990 568 Gene3D - 102 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5990 Tpr-Chr2 72260094 72271480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5990 1 563 EF-hand Containing Proteins AT3G07740 51.468 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g5990 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5990 K11314 - gmx:100779424 823.542