Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5982 ATGGCACCATATGAAAGTCATAGTAGTCATGATCATGATGAGCATCCAACTCCGACAGATTTTTTGAAATTAAATGTCAATATTCATTACTTGGCTAACTCAAATCACATAGGCTATGAATCCTTCAATCTTCCAACCATAATGTTCAAGAAATTCTTCAGCCAAGAGGGTCAACATTACCTAAGGAAACACTTATCCAAGGATCCCTTATTAACCTTGGATGTACTTGAACCATTAATAATTAAATTCATAAGTTTGGTTCAACAAGCATATAATATTGATTATTATTATGATATTATTGTTGACCATGATGATGAATTAGTTGAAACACAACCCAATGTGTTCCATTTGTGCTTGAATACGAAGATATGTGAAGATGATATTGGTGATGATGATGAACTAGATATGGAATTTGAAGAAGACATCAAGGTAGAAGAATATGGAATTTGTAGTATATGCATGGATGAGTTTGATCATATTATTGGCACATCAGACATAATTAACATGCCTTGTAATCATGTGTTTCACCAACAATGTATTGTGGAGTGGTTACAAACTAGTCGTACATGTCCCTTGTGTCGATATCCAATGCCTACTACTCTAAATAGTTGA 612 0.335 MAPYESHSSHDHDEHPTPTDFLKLNVNIHYLANSNHIGYESFNLPTIMFKKFFSQEGQHYLRKHLSKDPLLTLDVLEPLIIKFISLVQQAYNIDYYYDIIVDHDDELVETQPNVFHLCLNTKICEDDIGDDDELDMEFEEDIKVEEYGICSICMDEFDHIIGTSDIINMPCNHVFHQQCIVEWLQTSRTCPLCRYPMPTTLNS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5982 203 SMART ringv_2 149 194 IPR011016 GO:0008270
Tpr2g5982 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 203 IPR013083 -
Tpr2g5982 203 ProSiteProfiles Zinc finger RING-type profile. 150 194 IPR001841 -
Tpr2g5982 203 Pfam Ring finger domain 150 194 IPR001841 -
Tpr2g5982 203 SUPERFAMILY RING/U-box 149 200 - -
Tpr2g5982 203 SMART FANCL_C_2 146 202 - -
Tpr2g5982 203 PANTHER F6A14.12 PROTEIN-RELATED 143 199 - -
Tpr2g5982 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 199 - -
Tpr2g5982 203 SMART ring_2 150 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5982 Tpr-Chr2 72166972 72167664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5982 145 198 C3H Transcription Factor Family AT1G14200 48.214 2.55e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5982 - - mtr:MTR_3g108980 189.889