LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g5981	ATGGTTGAAGCTTCAGGGATGAGAATGATGATGATGTTCACCAACACAACCACTCTTATTCCTGCTTTCAATCCAACAATTCACAGAACAGGTCTCTGTCAACTACCTCTCTCACGAAGAAACAACCATGTTTCTGTTGTATCTGCAACTCAAACTAAACCATTTATGGAAACTATTCCTTGGGGATGTGAAACTGATTCACTTGAAAGTTCATCTTCTCTTGAGAAATGGCTTTCAGAGTCAGGTCTTCCTTCTCAGAAGATGGCTATTGATAAAGTTGATGTTGGAGAGAGAGGACTTGTTGCTTTGAATAATATTAGGAAAGGAGAGAAGCTTCTCTTTGTTCCTCCTTCACTTGTCATCACTCCTGATTCTGAGTGGAGCTGCCCAGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTGCCGGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGCCTCATGACATCTTCAAGATGGTTCAGTTATATATCGGCCTTACCTCGTCAACCCTACTCACTTCTTTACTGGTCACAGGCCGAACTAGATCGCTACTTGGAAGCTTCGCAGATTCGAGAGAGAGCAATTGAAAGGACTGATAATGTTATTGGAACATACAATGATATGAGGGCCAGAATATTTTCCAAATATCCTGATTTCTTCCCTGAAGAGGTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGTATTCTTTTCTCGCGCATGGTTCGGTTACCTTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGAGGTGGAGACATTTTTGGATTATGATAAATCGACAAAGGGAATTGTCTTTACGACCGACCGCCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGGAAAAAATCAAATGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGCGATTCAGTTGAGCTGTCACTGTCACTCGAGAAATCCGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAGTATGGATTATCAGGATCTCAGTGTTTTCCATTAAGGGTTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAGAAGGACTTCAGATATCCCGAAATAGAGGAGCAAGCATTTCAATTCATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAATAAGTTCTTACAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCTCCGAAACAACTCAACCGAAGACTCTTTCTAAAGCAGCTAGCAGTGGACTTGTGTACTAGCGAACGTAGAATACTATTTCGTGCTCAATATATACTGCGACGAAGACTGAGAGATATGAGGACCGGCGAATTAAAAGGCTTATCAATATTTAATGGGTTCCGGAAATTTTTCAAATGA	1506	0.4104	MVEASGMRMMMMFTNTTTLIPAFNPTIHRTGLCQLPLSRRNNHVSVVSATQTKPFMETIPWGCETDSLESSSSLEKWLSESGLPSQKMAIDKVDVGERGLVALNNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASLMTSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTDNVIGTYNDMRARIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHSCEVETFLDYDKSTKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLEKSDESYKEKLELLKKYGLSGSQCFPLRVTGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDFRYPEIEEQAFQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRRLRDMRTGELKGLSIFNGFRKFFK*	502

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g5981	501	Pfam	Rubisco LSMT substrate-binding	335	468	IPR015353	-
	Tpr2g5981	501	PANTHER	-	37	296	-	-
	Tpr2g5981	501	PIRSF	RMT_SET	9	498	IPR011192	GO:0009507\|GO:0030785
	Tpr2g5981	501	Gene3D	set domain protein methyltransferase, domain 1	37	315	-	-
	Tpr2g5981	501	CDD	SET_RBCMT	81	316	IPR044431	GO:0016279\|GO:0018022
	Tpr2g5981	501	SMART	set_7	86	308	IPR001214	GO:0005515
	Tpr2g5981	501	Gene3D	-	321	485	IPR036464	-
	Tpr2g5981	501	ProSiteProfiles	SET domain profile.	66	302	IPR001214	GO:0005515
	Tpr2g5981	501	Pfam	SET domain	98	302	IPR001214	GO:0005515
	Tpr2g5981	501	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	37	296	-	-
	Tpr2g5981	501	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	332	497	IPR036464	-
	Tpr2g5981	501	SUPERFAMILY	SET domain	72	319	IPR046341	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g5981	73	271	NAC Transcription Factor Family	AT3G56570	23.039	4.85e-07	50.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Tpr2g5981		SET	2.2e-16	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g5981	-		-	cam:101500121	819.69