Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5978 ATGGCTTCCAGAAAAGGCGTCAATCCTCGCTCCGGCGACGGTGCTAGTCCAGGGAAAATCTTCATCGGAGGTTTAGCCAAAGACACAACATTAGAGACATTCGTGAAGTATTTTGGTAGGTATGGAGAGATAACAGATTCCGTTATCATGAAAGATCGGCATACCGGTCGGCCCCGAGGATTCGGTTTCATCATTTATGCGGATCCTTCTGTTGTTGATCAAGTTATTATGGAGAATCACATAATCGATGATAAGCAGGTTGAAATCAAGAGGACTATTCCTAAGGGTTCATCACAACAAAGTAATGATTTCAAAACAAAGAAGATTTTTGTCGGTGGCATTCCACCAACAGTATCCGATGATGAGCTCAAGAACTTCTTCTCTAAGCATGGGAATGTTGTGGAGCACGAGATAATATGTGACCACACCACTAAACGACCCCGTGGATTTGGTTTTGTAGTTTTTGATAATGATAAAGTTGTTGATAATTTGTTAGCTGATGGGAACATGATTGATATGGATGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCTTCAAATTCAGCTTCTTTTCCTTCATTTACTAGTGATTCTAGGGCACGTTCTTACAATGATGGTTTTGGTGGATTTGGTGATTCTTATGGAAGTTTTCCTGGTGGAGGTTACGGCCCTGCATCTTATAGGTCACTTGGAGGTTATGGCGGTAGGCTTAGTGATTATGGTGGGTATGAAGGTGGAGATGACTTCAGTGGTGGTTTTGGGGGTTATGGTGGTCGTGGTGGTACCGGTGGTTATGCTGGCTATAGAGGAGAATCTTCTTTTGGCTATTCTGGCCGCTATGGGTCGTACATGAGTGCCCTTGGCGGTGGATACAGTGGTGGTGGGTTAGGCCCATATGGGGGGAGAGGTGCTGGGGGCTATGGAAGTTATGGTGGTCCTGCCACTGGTGGAGGTTATGAATTTGGCCCTGGTGCTGGTTTTGATGGGACGGGAGGACTCTATTCTAGCAGGGGTGGTTATAGGGGCAGTAGTCGCTTCCATCCTTACACACGATAG 1065 0.4554 MASRKGVNPRSGDGASPGKIFIGGLAKDTTLETFVKYFGRYGEITDSVIMKDRHTGRPRGFGFIIYADPSVVDQVIMENHIIDDKQVEIKRTIPKGSSQQSNDFKTKKIFVGGIPPTVSDDELKNFFSKHGNVVEHEIICDHTTKRPRGFGFVVFDNDKVVDNLLADGNMIDMDGTQVEIKKAEPKKSSNSASFPSFTSDSRARSYNDGFGGFGDSYGSFPGGGYGPASYRSLGGYGGRLSDYGGYEGGDDFSGGFGGYGGRGGTGGYAGYRGESSFGYSGRYGSYMSALGGGYSGGGLGPYGGRGAGGYGSYGGPATGGGYEFGPGAGFDGTGGLYSSRGGYRGSSRFHPYTR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5978 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Tpr2g5978 354 SUPERFAMILY RNA-binding domain, RBD 13 100 IPR035979 GO:0003676
Tpr2g5978 354 SMART rrm1_1 108 181 IPR000504 GO:0003723
Tpr2g5978 354 SMART rrm1_1 19 90 IPR000504 GO:0003723
Tpr2g5978 354 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 354 - -
Tpr2g5978 354 Gene3D - 18 98 IPR012677 -
Tpr2g5978 354 Gene3D - 99 218 IPR012677 -
Tpr2g5978 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Tpr2g5978 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 76 IPR000504 GO:0003723
Tpr2g5978 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Tpr2g5978 354 SUPERFAMILY RNA-binding domain, RBD 98 191 IPR035979 GO:0003676
Tpr2g5978 354 PANTHER OS08G0320100 PROTEIN 2 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5978 Tpr-Chr2 72121712 72124680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5978 4 178 Eukaryotic Initiation Factors Gene Family AT1G71770 26.562 1.22e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5978 K12741 - gmx:100801373 388.267