Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5976 ATGGGTTACATATGTGATTTTTGTGGAGACCAAAGGTCGATGGTGTACTGCCGTTCCGATGCAGCATGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCAGCGAATACGCTAGCTCGAAGACATTCGAGGACACTTTTATGTGAAAGATGCAGTTCACAACCAGCTTTGGTTAGGTGTTCTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTAGGTCATGGTAATAACTCTACATCTTCCAATCATAAGAGACAAACAATTAATTGTTACTCCGGTTGTCCTTCGTCGTCCGAACTTTCTTCAATATGGTCTTTTGTGTTGGATATCCCTTCTTTGAGTGAAACTACATGTGAGCAAGAATTAGGTTTCATGAGTATTAATGAGAATAGGAGTGCTTGGGTCGATCCGAAAAACCAGAATGTGTCTGATTCAGATAAAGCTACTGATTTACCTGATTCGGATAAGTCTTTCGTCGGTACATCTTCAAAGCCAGAATCAAGCAAAGAACCGCGTATGCTTGACCGCTCAGATGGACCTACCAATGAATGTGTGCCAAAGTTATACTGTCCTGCTAAAAATTGCCCTGATGCAAGTGAAGATGATGATGATCTGTATGGCGATTTCGATATGGATGAAATGGATATAAATATTGAGAACTATGATGAACTTTTTGGTATGGCCCTTACTCATTCTGAAGAGCTTTTTGAAAACGGTGGATTTAACAGCTTATTTGGAGCAAAGGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTATTGCAGCTGAGGGTTCATCAATTGGACATGTTAATGCAGCACAACCAGCATGCAGCACTGCAGCATCTGCAGATTCTATATTGAGTACTAAAACTGAACCGAATCTTTGTATTACGGCAAAACCATCCCAATCAAGCCTTTCTTTTTCTGGTATTAATGAAGACGGTGGTGGTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCTGAAAATGAGCTACAACTACAATCTGCTAATCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAGAAGACTCGCAAGTTCGACAAAAGAGTGAGGTATGCCTCTCGCAAGGAAAGAGCTGACGTCCGAAGACGCGTGAAAGGCCGGTTTGTCAAAGCTGGCGAGGCCTACGATTATGACCCTTTGAGCCAAACCAGAAGCTATTGA 1239 0.4173 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKISLCQNCDWLGHGNNSTSSNHKRQTINCYSGCPSSSELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNVSDSDKATDLPDSDKSFVGTSSKPESSKEPRMLDRSDGPTNECVPKLYCPAKNCPDASEDDDDLYGDFDMDEMDINIENYDELFGMALTHSEELFENGGFNSLFGAKAMSAGDSNCQDAIAAEGSSIGHVNAAQPACSTAASADSILSTKTEPNLCITAKPSQSSLSFSGINEDGGGGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5976 412 CDD Bbox1_BBX-like 4 47 - -
Tpr2g5976 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Tpr2g5976 412 MobiDBLite consensus disorder prediction 137 182 - -
Tpr2g5976 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 412 - -
Tpr2g5976 412 CDD Bbox1_BBX-like 47 90 - -
Tpr2g5976 412 Pfam CCT motif 355 397 IPR010402 GO:0005515
Tpr2g5976 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tpr2g5976 412 SMART bboxneu5 48 90 IPR000315 GO:0008270
Tpr2g5976 412 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tpr2g5976 412 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Tpr2g5976 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5976 Tpr-Chr2 72047584 72051734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5976 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 53.428 1.07e-145 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr2g5976 CCT 7.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5976 - - gmx:100796748 645.195