Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5975 ATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTTTTATGCATAATTCTAGTAAACACTGCTATGTCAATATCAATATTCAAAGGCATTATTAGGACTATCCTACATATAATTGGTATCATTGCTTCACCATTATCCTCAACTTCCACTCCTTCACAAGATTACAGTATCTCTCAAAACTCACCTGAGTCGTATGAATTTCATCTCAGTCCCTCAGATGATTTCATTGAAGAGTTTAGAAGTAGGACACCAACACTTAGGTTTGACAGTGTGTGTAGTAGCTGGAAAGAACCTGAACATGATTGTTCAGTGTGTCTTACTCAATTTGAACCTGAATCAGAGATAAACTACTGTTTATCTTGTGGACATGTTTTTCATAAAGTGTGTTTGGAAAAGTGGTTGGATTATTGGAACATTACATGTCCACTTTGTAGGAGTCCTTTAATTCCTGAAGATGATGCAACTTGCTTATGGTAA 480 0.3688 MGLSSLPAPSEGVLCIILVNTAMSISIFKGIIRTILHIIGIIASPLSSTSTPSQDYSISQNSPESYEFHLSPSDDFIEEFRSRTPTLRFDSVCSSWKEPEHDCSVCLTQFEPESEINYCLSCGHVFHKVCLEKWLDYWNITCPLCRSPLIPEDDATCLW* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5975 159 ProSiteProfiles Zinc finger RING-type profile. 103 146 IPR001841 -
Tpr2g5975 159 SMART ringv_2 102 146 IPR011016 GO:0008270
Tpr2g5975 159 PANTHER - 1 159 IPR044249 -
Tpr2g5975 159 SMART ring_2 103 145 IPR001841 -
Tpr2g5975 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 151 IPR013083 -
Tpr2g5975 159 SUPERFAMILY RING/U-box 95 152 - -
Tpr2g5975 159 Pfam Ring finger domain 102 146 IPR001841 -
Tpr2g5975 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5975 Tpr-Chr2 72038008 72039787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5975 1 153 C3H Transcription Factor Family AT2G04240 58.710 3.49e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5975 K16285 - gmx:100786803 250.751