Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5968 ATGTCACTTTCTTCTTTTTCTTCTTTTTCTTCTATACGAGAGTTGTTTTCTCAACAATTTTCAACCAAGATTAGGGTTCTTGTGATTGATCATGATATCAATCTTCTCAATTCTATTGAGAAAGTATGCAGTCAATTCTATTACACAGTCAGGACATGCTCCAATGTTTCGGATGCTTTGAATCTTTTGATGGAAAAAAAGGATAATTTTGATTTGCTACTAATTGAAGCTATAATGCCCAATGTGAATTCATATGAATTTTTGCAATATGTTAGGCAACAAATTGATATTCCTGTTATTATGATGAGTGCGGATGACTCAAGAAGTGTTGTGATGAAGGCTATTGAAGATGGAGCGTGTGATTATTGGATCAAACCTTTGACTGATAATCTAATTATGAACATGTGGCAACATGTTGCAAGAAAAATGTGGAATGAAAATAAAAACCTAAAATTTGGGGTTGAAGTCAGTCTGAAAAAAGGGGAGATATATGATTCAAAATTGCCTTTAATTGATCCAAAAATAGGAGTGATCAACACTAGTGTGGAACAAAAGAGTGTAGAAAAGAATAATGACAAACCTGAATCGTCAACAAAGACACGTGTTAAATGGACACAAGAGTTGAAGAGAAAGTTTGCTAGTGCTATAATGGAACTCAATGCCGATAAGGCACAACCCAATAAAATTCTTGCAAGGATGAATGTGCCTGGGTTGACAAGAGAGCATGTAGCTAGTCACTTACAGAGAGAAATTGAAGAGAGGAGATACAAAGAAACAAAAAAAACAGAACAGAACTGCAGAAACAAAAAGAGAAACCAAGATTTCAAATGGATCTTCAGAATTTGA 846 0.3428 MSLSSFSSFSSIRELFSQQFSTKIRVLVIDHDINLLNSIEKVCSQFYYTVRTCSNVSDALNLLMEKKDNFDLLLIEAIMPNVNSYEFLQYVRQQIDIPVIMMSADDSRSVVMKAIEDGACDYWIKPLTDNLIMNMWQHVARKMWNENKNLKFGVEVSLKKGEIYDSKLPLIDPKIGVINTSVEQKSVEKNNDKPESSTKTRVKWTQELKRKFASAIMELNADKAQPNKILARMNVPGLTREHVASHLQREIEERRYKETKKTEQNCRNKKRNQDFKWIFRI* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5968 281 Gene3D - 196 261 - -
Tpr2g5968 281 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 248 IPR006447 GO:0003677
Tpr2g5968 281 Pfam Myb-like DNA-binding domain 201 249 IPR001005 -
Tpr2g5968 281 SUPERFAMILY CheY-like 23 148 IPR011006 -
Tpr2g5968 281 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Tpr2g5968 281 SMART REC_2 24 136 IPR001789 GO:0000160
Tpr2g5968 281 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 16 257 - -
Tpr2g5968 281 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Tpr2g5968 281 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 257 IPR045279 GO:0009736
Tpr2g5968 281 SUPERFAMILY Homeodomain-like 197 249 IPR009057 -
Tpr2g5968 281 CDD REC_typeB_ARR-like 26 140 - -
Tpr2g5968 281 Gene3D - 22 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5968 Tpr-Chr2 71965779 71967133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5968 17 237 Response Regulator Gene Family AT4G16110 36.752 1.28e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr2g5968 Response_reg 1.8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5968 - K14491 cam:101491966 228.409