Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5958 ATGAGAATAAAAAGCGTCGTCGCCGGTGGCCGCCGCCGTAGTATTACGCCTCGTCCCACTCCGTCCATCTCTCCGATTCCTAATCTTTCCACCGCTAAGGACAACCACAATGCAACCGTCTACAACAGCATCGACAACCACACAGACGCTCCAATTCCCGATTTCGTTCCCGATACCGACACCGAAGATTCGTTAGACGATAAAAGTTGCATTACTTGCAAAACAGCCGGAGGAGCATTACTGGTATGTACTCAAACTGATTGCCACATTGCTGTTCACTACAATTGCATCGGTTCCGAACCTAATTTCGATGATTCTGGAAACTTCTTCTGTCCTTACTGCTTCTACAAACGAGCCTTGAAGAAAACTAGAGAATTAAGAGAAATAGCTGTTAGAGCCAAAAATGTTCTTTCTAGTTTTTTGGATAAAGGCCAAACAGTGCTTAAAGATAACGAAAATCGCCCTATCAAACCTGTCAAACTGGAACCGGTTCAGGATCAACCTGTCAAACCGGAACTGGCTCAGGATCATGTAAACCGGAATGGCCAAACAGTGCTTAAGGATAACGAAAGCCACCCTATCGAACCTGTCAAACTGGAACCGGTTCAGGATCAACCTGTCAAACCAAAACTGGTTCAGCATCATGTAAACCGGAATGAACATGAACCGGAAGTTTCTGAGAAAGGAAAAGAACACAATGATAATGATAATGATAAAGATAAAGGAGAGGTTTCTTTATCGGAGAGTTCGGTGGGTGGATCTACTAAAGATTCGGATTCATCGTTTTGCATATCGGTGAAGAAAGGTCATACCAATGCTAAACGGAAGGTTGCACCGGTGAAAAAATCTTTGTTACCGGAACGAAAAGCTGGTGGTGCTGATGCTGCTGGTGATGATGGGGAGGAGGAGGAAGTTACCAGTTCTAGAAGAACCACAAGTCGACGAAAGCAAGTCAAGAAGCAGAAGTTATTTACTGTAAGGCGTAGGAATTTGTTTTGGACAGCCGAAGAAGAAAAGGCTCTCAAGGAAGGAGTATCAAAGTTCGCAACAGAAAATCAGAATATCCCTTGGAAGCAAATTTTAGAATTTGGTTGTCGTGTGTTTGATAGCACTCGTACTCCTAGTGATCTCAAGGATAAATGGAGGAACCTCATGAAGGAAGGATCCAAGTAG 1173 0.4382 MRIKSVVAGGRRRSITPRPTPSISPIPNLSTAKDNHNATVYNSIDNHTDAPIPDFVPDTDTEDSLDDKSCITCKTAGGALLVCTQTDCHIAVHYNCIGSEPNFDDSGNFFCPYCFYKRALKKTRELREIAVRAKNVLSSFLDKGQTVLKDNENRPIKPVKLEPVQDQPVKPELAQDHVNRNGQTVLKDNESHPIEPVKLEPVQDQPVKPKLVQHHVNRNEHEPEVSEKGKEHNDNDNDKDKGEVSLSESSVGGSTKDSDSSFCISVKKGHTNAKRKVAPVKKSLLPERKAGGADAAGDDGEEEEVTSSRRTTSRRKQVKKQKLFTVRRRNLFWTAEEEKALKEGVSKFATENQNIPWKQILEFGCRVFDSTRTPSDLKDKWRNLMKEGSK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5958 390 Pfam Myb-like DNA-binding domain 333 384 IPR001005 -
Tpr2g5958 390 SUPERFAMILY FYVE/PHD zinc finger 60 122 IPR011011 -
Tpr2g5958 390 MobiDBLite consensus disorder prediction 211 245 - -
Tpr2g5958 390 ProSitePatterns Zinc finger PHD-type signature. 70 114 IPR019786 -
Tpr2g5958 390 Gene3D - 333 390 - -
Tpr2g5958 390 MobiDBLite consensus disorder prediction 272 316 - -
Tpr2g5958 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 153 IPR013083 -
Tpr2g5958 390 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 217 387 - -
Tpr2g5958 390 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 31 245 - -
Tpr2g5958 390 MobiDBLite consensus disorder prediction 149 260 - -
Tpr2g5958 390 SMART sant 329 387 IPR001005 -
Tpr2g5958 390 CDD PHD_SF 69 114 - -
Tpr2g5958 390 MobiDBLite consensus disorder prediction 292 311 - -
Tpr2g5958 390 ProSiteProfiles Myb-like domain profile. 333 385 IPR001005 -
Tpr2g5958 390 SUPERFAMILY Homeodomain-like 327 386 IPR009057 -
Tpr2g5958 390 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 217 387 - -
Tpr2g5958 390 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 31 245 - -
Tpr2g5958 390 SMART PHD_3 69 115 IPR001965 -
Tpr2g5958 390 MobiDBLite consensus disorder prediction 1 29 - -
Tpr2g5958 390 CDD SANT_TRF 333 386 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g5958 Myb_DNA-binding 3.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5958 - - mtr:MTR_3g082160 345.125