Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5938 ATGGACAAGGAAGGTGCTGAACTTCAAACTGTTACAGTTTCAATGATGTCAGATTCTTCTCTTCATAATCAGTCGAGAAGACCTAGTCTCTCATCCCTACAAATACCAACAAGGACACTAGAAAGTGCATTATCTTCTTCTACTAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACTACCAAAGTGAAGTCCTCTATGAGAAATTTACTTTCTGATAGGAGCTTTAGGACAAAAACCATTTCACAAGATAGCGAAAAGACAGTTTTGATTGTTCCTGATACTTTATCATCATCGGATAATGGTCCTCTAGATAATAAGCCTTCAACTTCAAGGTCCCTTTCACTTAATAAGATTTTGTTCCCTTCATCAACAAAAGCTGCACATTCGTTACCAGTTACTCCAATTGCAAATTCAGGCGCAGAGAATCTACATGGAAGAAATGTAGGGGGTGATTCCGAGTTAAATAAAATGAAAGTGAATAAGCATATGACTCGATCATTTTCGGTTCCGGTTAATGTCAAGGCTACTAATAATTTAAGGCCTACAGATTCTAGGCGTCTGGTTCGTGTAATTTCAGTAAGACCACATCCAGCAACTACTGATGACAATTCAACTCTCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGAGATACTCTTAGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGACGTCTGCAAACAGGATGTCCGGAACCTTTCAGTAACACTCTTGAAAATTTCTAGCCCTCCAACTGTTGTTCGGCAGACATTGACTGCATCACAGCAGAGAGCAGTGACTAATTACAGGATCTGGCAGGATGTACCAGTACTTGTGTTGGTCAGCATGCTTGCATACTTTTGCTTTCTGGAGGAACTACTGGTTTCGGATTTGGGCTCACGTGCTCTCGCAATTTCATTGCCTTTCTCCTGCATTTTAGGCCTCCTTTCTTCTATGATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCATTTGTCATCCTGTTTGCTCATATATTCTATTCTATACTTAATGTTAGTGCGCTTTTCTCGGTTCTTCTTGCAACATTCACTGGATTTGGAATTTCAATCAGCATGAATTCTCTACTAACGGAATATATTAGATGGAAAACAAACAGGCAGATTCAATCTGCTAATCAAAATATTATTTCGAGACAACTGCAGCAGCAGCAACAGCAGCAAGAAACTCAAAGACAACAACATCAACTGCAAAGGATGCAGCAAGAACAGCACCAATGA 1449 0.4079 MDKEGAELQTVTVSMMSDSSLHNQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTTKVKSSMRNLLSDRSFRTKTISQDSEKTVLIVPDTLSSSDNGPLDNKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSGAENLHGRNVGGDSELNKMKVNKHMTRSFSVPVNVKATNNLRPTDSRRLVRVISVRPHPATTDDNSTLSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLSVTLLKISSPPTVVRQTLTASQQRAVTNYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGSRALAISLPFSCILGLLSSMIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVSALFSVLLATFTGFGISISMNSLLTEYIRWKTNRQIQSANQNIISRQLQQQQQQQETQRQQHQLQRMQQEQHQ* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5938 482 MobiDBLite consensus disorder prediction 463 482 - -
Tpr2g5938 482 SUPERFAMILY RING/U-box 237 292 - -
Tpr2g5938 482 Coils Coil 454 482 - -
Tpr2g5938 482 MobiDBLite consensus disorder prediction 10 90 - -
Tpr2g5938 482 PANTHER OS02G0165000 PROTEIN 17 466 - -
Tpr2g5938 482 MobiDBLite consensus disorder prediction 1 90 - -
Tpr2g5938 482 PANTHER OS02G0165000 PROTEIN 17 466 - -
Tpr2g5938 482 SMART ringv_2 240 289 IPR011016 GO:0008270
Tpr2g5938 482 ProSiteProfiles Zinc finger RING-CH-type profile. 233 295 IPR011016 GO:0008270
Tpr2g5938 482 CDD RING_CH-C4HC3_MARCH 241 289 - -
Tpr2g5938 482 Pfam RING-variant domain 241 288 IPR011016 GO:0008270
Tpr2g5938 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 298 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5938 Tpr-Chr2 71476437 71481013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5938 235 296 C3H Transcription Factor Family AT2G37950 46.032 2.01e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5938 - - gmx:100779396 638.262